View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_low_1 (Length: 932)
Name: NF6063_low_1
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 632; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 161 - 925
Target Start/End: Complemental strand, 2768948 - 2768180
Alignment:
| Q |
161 |
gcagaatcaggaaatgggttggcgagtgaagagnnnnnnntcttacttgaacggtacggttatgatgttgatgctgatgactactttcctcaatcttctt |
260 |
Q |
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| T |
2768948 |
gcagaatcaggaaatgggttggcgagtgaagagaaaaaaatcttacttgaacggtatggttatgatgttgatgctgatgactactttcctcaatcttctt |
2768849 |
T |
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| Q |
261 |
ctccaaaggnnnnnnnnnnnnnnn--cctatttgtgtttttatatgattgtaactttctgttatactgtaaattacaacttttataagggttgtttgaat |
358 |
Q |
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| T |
2768848 |
ctccaaaggtttttcattttttttttcctctttgtgtttttatatgattgtaaatttctgtaatactgtaaattacaacttttataagggttgtttgaat |
2768749 |
T |
|
| Q |
359 |
tgcttttctgcttaacttttcaatttgaataagtttatgtt-gttgatttatgaaaaaagtgcttatatgatttaagttgagataaagttattgaaaaat |
457 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2768748 |
tgcttttctgcttaatttttcaatttgaataagtttatgttagttgatttatgaaaaaagtgcttatatgatttaagttgagataaagttattgaaaaat |
2768649 |
T |
|
| Q |
458 |
ttgagatgcagtggcttattttgatttattcaacaagatgttatttaaaaataatgtatatgtaaagatttcttacactgtcataaaatcacacatgatt |
557 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2768648 |
ttgagatgcagtggcttattttgatttatacaacaagatgttatttaaaaatagtgtatatgtaaagatttcttacactgttataaaatcacacatgatt |
2768549 |
T |
|
| Q |
558 |
ggttgcgatttgctgactttttgtttcgtgaattttgtcgtgttttgcaactatttagtcgaagaggaagaaggagcaacaaaagacaagaggagggaaa |
657 |
Q |
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| T |
2768548 |
ggttgcgatttgctgactttttgtttcgtgaattttgtcgtgttttgcaactatttagtcgaagaggaagaaggagcaacaaaagacaagaggagggaaa |
2768449 |
T |
|
| Q |
658 |
caagtgcaggatccacccgaggaacctaagcctcctcgtacgacacataaattacttcaggtaatctcattttaacacttggaagtgctaattgatgagg |
757 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2768448 |
caagtgcaggatccacctgtggaacctaagcctcctcgtacgacacataaattacttcaggtaatctcattttaacacttggaagtgctaattgatgagg |
2768349 |
T |
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| Q |
758 |
aaaataaaaactgttatcttcgttaactgatgttaacgtctttcttcagtttatcgtatgctttttaacacccgttgcatcaaagcattataacctataa |
857 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2768348 |
aaaataaaaactgttatcttcgttaactgatgttaacgtctttcttcagtttatcgtatgctttttaacacccgttgcatcaaagcattataacctataa |
2768249 |
T |
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| Q |
858 |
-ggtataccatcctactttaacatatgtttggatgcgtggctgtaactttttcttgcatccctatgcta |
925 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2768248 |
gggtataccatcctactttagcatatgtttggatgcgtggctgtaactttttcttgcatccctatgcta |
2768180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 2769091 - 2769041
Alignment:
| Q |
18 |
gtatcgacatgttacttgtatatgtcaatgcttcacagttcatcattgctg |
68 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2769091 |
gtatcgacatgttacttgtatatgtcaatgcttcacagttcatcattgctg |
2769041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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