View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_low_11 (Length: 469)
Name: NF6063_low_11
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 2 - 458
Target Start/End: Complemental strand, 22990392 - 22989935
Alignment:
| Q |
2 |
catcagccacagatgcccacctgtttgaacagcatgcttaaatttgggacaaat-ctttttcaagctgtcggtgaattcgatggtaattatattatactt |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22990392 |
catcagccacagatgcccacttgtttgaacagcatgcttaaatttgggacaaattctttttcaagctgttggtgaattcgatggtaattatattatactt |
22990293 |
T |
|
| Q |
101 |
gttgcctatatgagttatgttgatgcatcattgccgcccaagcttccactagattatgttcagtctactcttgaatattcagattcagatatcatggagg |
200 |
Q |
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||||||||||||||||||||||||||||| ||||| ||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22990292 |
gttgcctatatgagttatgttgatgcatccttgccacccgagcttcctccagattatgttcagtctactcttgaatattcagattcagatatcatggagg |
22990193 |
T |
|
| Q |
201 |
gggagtcgcgaatctcacttaactgtcccataggattgacacgaatcaagactcctgttaaagggcgcacatgcaaacacttccagtgtttcgattttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22990192 |
gggagtcgcgaatctcacttaactgtcccataggattgacacgaatcaagactcctgttaaagggcgcacatgcaaacacttccagtgcttcgattttga |
22990093 |
T |
|
| Q |
301 |
caacttcattgaaataaattgtaacaggccgcactggcgctgtcgccattgcaatgagtatgtctcctatacagatatttgtcttgacagaaacatggtt |
400 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22990092 |
caacttcattgaaataaattgttacaggccgctctggcgctgtccccattgcaatgagtatgtctcctatacagatatttgtcttgacagaaacatggtt |
22989993 |
T |
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| Q |
401 |
gagatcctgaaaaaagttggtgagaatgttgtggaagtgattgtccatcatgatgatg |
458 |
Q |
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| T |
22989992 |
gagatcctgaaaaaagttggtgagaacgttgtggaagtgattgtccatcatgctgatg |
22989935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 296 - 403
Target Start/End: Original strand, 2541553 - 2541660
Alignment:
| Q |
296 |
tttgacaacttcattgaaataaattgtaacaggccgcactggcgctgtcgccattgcaatgagtatgtctcctatacagatatttgtcttgacagaaaca |
395 |
Q |
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||||||||||||||| ||||||||| ||| ||||| ||||||||| | |||||||| | | ||||| ||||||||||||| ||||||||||||||| |
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| T |
2541553 |
tttgacaacttcattaaaataaattttaagaggccatcctggcgctgcccccattgcactcggcctgtctgctatacagatattcgtcttgacagaaaca |
2541652 |
T |
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| Q |
396 |
tggttgag |
403 |
Q |
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|| ||||| |
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| T |
2541653 |
tgattgag |
2541660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 2538112 - 2538189
Alignment:
| Q |
8 |
ccacagatgcccacctgtttgaacagcatgcttaaatttgggacaaatctttttcaagctgtcggtgaattcgatggt |
85 |
Q |
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|||||||||||||||||| ||| | || ||||||||||||||||||||| |||||||||| ||| | ||||||||| |
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| T |
2538112 |
ccacagatgcccacctgtgtgactggtatccttaaatttgggacaaatcttcttcaagctgtgggtcagttcgatggt |
2538189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 2538281 - 2538309
Alignment:
| Q |
87 |
attatattatacttgttgcctatatgagt |
115 |
Q |
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| T |
2538281 |
attatattatacttgttgcctatatgagt |
2538309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 49515576 - 49515528
Alignment:
| Q |
80 |
gatggtaattatattatacttgttgcctatatgagttatgttgatgcat |
128 |
Q |
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|||||| ||||||||||||||||||| ||||||| |||||||| ||||| |
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| T |
49515576 |
gatggtcattatattatacttgttgcttatatgaattatgttgttgcat |
49515528 |
T |
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