View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_low_13 (Length: 441)
Name: NF6063_low_13
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 45449259 - 45448848
Alignment:
| Q |
18 |
atcttgataattgttttctaagatgaacaatggataaggcacataaccgacaacctactgctagtcctatgtaaagtatgttttggtgagatgatttttg |
117 |
Q |
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| T |
45449259 |
atcttgataattgttttctaagatgaacaatggataaggcacataactgacaacctactgctagtcctatgtaaagtatgttttggggagatgatttttg |
45449160 |
T |
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| Q |
118 |
aagcatgattcataatgttcatgaaataatacttgaacaataattctcaaccaaccttaatattttcctnnnnnnncttggcaataaggtgtattaaggt |
217 |
Q |
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| T |
45449159 |
aagcatgattcataatgttcatgaaataatacttgaacaataattctcaaccaaccttaatattttcctaaaaaaacttggcaataaggtgtattaaggt |
45449060 |
T |
|
| Q |
218 |
tatagcttacaagtcacaatagacaggttattttttcatcttattctaaaaaagaagtagcctttataacttcaagtcaaaacaggaaagagcaattaga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
45449059 |
tatagcttacaagtcacaatagacaggttattttttcatcttattctaaaaaagaagtagccttaataacttcaagtcaaaacaggaaagagcaattgga |
45448960 |
T |
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| Q |
318 |
aatgctaaacactgaataagtagtaggttgaaataaaaaatagctcggactaagatgatcattgaacggttaggctaagttaaatgcggcaaaagctaac |
417 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45448959 |
aatgctaaacaatgaataagtagtaggttgaaataaaaaatagctcggactaagataatcatcgaacggttaggctaagttaaatgcggcaaaagctaac |
45448860 |
T |
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| Q |
418 |
acaaacatcctt |
429 |
Q |
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| T |
45448859 |
acaaacatcctt |
45448848 |
T |
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