View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6063_low_17 (Length: 424)
Name: NF6063_low_17
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 15 - 403
Target Start/End: Complemental strand, 22603585 - 22603197
Alignment:
| Q |
15 |
gaaggacataatagaatcaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaaca |
114 |
Q |
| |
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|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22603585 |
gaaggatataatagaaacaatggataaatataaaatcactaaagaattgtttattgcactgaaacaaaaatcaaaagaaaaatgcatgcaccatggaaca |
22603486 |
T |
|
| Q |
115 |
ttcaggaaatcgctattggtgggttgtttcttcataacaggagagcaatattaagtatgtgcttataaattactgtaattagcaatataagagatgtcca |
214 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22603485 |
ctcaggaaaccgctattggtgggttgtttcttcatgacaggagagcaatattaagtatgtgcttataaatttctgtaattagcaatataagagatgtcca |
22603386 |
T |
|
| Q |
215 |
tttgagttagcaacaggatcataagaaaggatcaagtattccattgcaaaatttaaacatgacataccaaaaagtaatggagaagttagaagcaaacagt |
314 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || |
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| T |
22603385 |
tttgagttagcaacaagatcataagaaaggatcaagtattccattgcaaaatttaaacatgacgtaccaaaaagtgatggagaagttagaagcaaacggt |
22603286 |
T |
|
| Q |
315 |
gtcattgaggggcctttctctgaagaattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagcagttg |
403 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22603285 |
gtcattgaggggcctttctctgaataattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagcagttg |
22603197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 403
Target Start/End: Original strand, 15214313 - 15214698
Alignment:
| Q |
15 |
gaaggacataatagaatcaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaaca |
114 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15214313 |
gaaggatataatagaaacaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaaca |
15214412 |
T |
|
| Q |
115 |
ttcaggaaatcgctattggtgggttgtttcttcataacaggagagcaatattaagtatgtgcttataaattactgtaattagcaatataagagatgtcca |
214 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15214413 |
ttcaggaaatcgctattggtgggttatttcttcatgacaggagaacaatattaaatatgtgcttataaattactgtaattagcaatataagagatgtcca |
15214512 |
T |
|
| Q |
215 |
tttgagttagcaacaggatcataagaaaggatcaagtattccattgcaaaatttaaacatgacataccaaaaagtaatggagaagttagaagcaaacagt |
314 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
15214513 |
tttgagttagcaacatgatcataagaaaggatcaagtattccattg---aatttaaacatgacataccaaaaagtgatggagaagttagaagcaaacagt |
15214609 |
T |
|
| Q |
315 |
gtcattgaggggcctttctctgaagaattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagcagttg |
403 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
15214610 |
gtcattgaggggcctttctctgaacaattgtttaataaattgtgtagaactaaaccattcaattgtgaaaaatagaatggaagcagttg |
15214698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 403
Target Start/End: Original strand, 15253532 - 15253917
Alignment:
| Q |
15 |
gaaggacataatagaatcaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaaca |
114 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15253532 |
gaaggatataatagaaacaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaaca |
15253631 |
T |
|
| Q |
115 |
ttcaggaaatcgctattggtgggttgtttcttcataacaggagagcaatattaagtatgtgcttataaattactgtaattagcaatataagagatgtcca |
214 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15253632 |
ttcaggaaatcgctattggtgggttatttcttcatgacaggagaacaatattaaatatgtgcttataaattactgtaattagcaatataagagatgtcca |
15253731 |
T |
|
| Q |
215 |
tttgagttagcaacaggatcataagaaaggatcaagtattccattgcaaaatttaaacatgacataccaaaaagtaatggagaagttagaagcaaacagt |
314 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15253732 |
tttgagttagcaacatgatcataagaaaggatcaagtattccattg---aatttaaacatgacataccaaaaagtgatggagaagttagaagcaaacagt |
15253828 |
T |
|
| Q |
315 |
gtcattgaggggcctttctctgaagaattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagcagttg |
403 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
15253829 |
gtcattgaggggcctttctctgaacaattgtttaataaattgtgtagaactaaaccattcaattgtgaaaaatagaatggaagcagttg |
15253917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 7043681 - 7043622
Alignment:
| Q |
340 |
aattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagca |
399 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
7043681 |
aattgtttaataaattgtgtagaagtaaaccatgcaattgtgagaaatagaatggaagca |
7043622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 15 - 403
Target Start/End: Complemental strand, 45622064 - 45621676
Alignment:
| Q |
15 |
gaaggacataatagaatcaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaaca |
114 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45622064 |
gaaggatataatagaaacaatggataaatataaattcgctaaagagttgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaaca |
45621965 |
T |
|
| Q |
115 |
ttcaggaaatcgctattggtgggttgtttcttcataacaggagagcaatattaagtatgtgcttataaattactgtaattagcaatataagagatgtcca |
214 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45621964 |
ttcaggaaaccgctattggtgggttgtttcttcatgacatgagagcaatattaagtatgtgcttataaattactgtaattagcaatataagagatgtcca |
45621865 |
T |
|
| Q |
215 |
tttgagttagcaacaggatcataagaaaggatcaagtattccattgcaaaatttaaacatgacataccaaaaagtaatggagaagttagaagcaaacagt |
314 |
Q |
| |
|
||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | |
|
|
| T |
45621864 |
tttgagttagcaacaagatcataataaatgatcaagtattccattgcaaaatttaaacatgacgtaccaaaaagtgatggagaagttagaagcaaacaat |
45621765 |
T |
|
| Q |
315 |
gtcattgaggggcctttctctgaagaattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagcagttg |
403 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45621764 |
gtcattgaggggcctttctctgaataattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagcagttg |
45621676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 399
Target Start/End: Complemental strand, 20188392 - 20188008
Alignment:
| Q |
15 |
gaaggacataatagaatcaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaaca |
114 |
Q |
| |
|
|||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20188392 |
gaaggatataatagaaacaatgcataaatataaaatcactaaagaattgtttattgcagtgaaactgaaatcaaaagaaaaatgcatgcaccatggaaca |
20188293 |
T |
|
| Q |
115 |
ttcaggaaatcgctattggtgggttgtttcttcataacaggagagcaatattaagtatgtgcttataaattactgtaattagcaatataagagatgtcca |
214 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||| | |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20188292 |
ttcaggaaaccgctattggtggggtgtttcttcatgataggagagcaatattaaatacgtgcttataaattactgtaattagcaatataagagatgtcca |
20188193 |
T |
|
| Q |
215 |
tttgagttagcaacaggatcataagaaaggatcaagtattccattgcaaaatttaaacatgacataccaaaaagtaatggagaagttagaagcaaacagt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
20188192 |
tttgagttagcaacaggatcataagaaaggatcaagtattccattgcaaaatttaaacatgacgtaccaaaaagtgatggagaagttagaagcaaacagt |
20188093 |
T |
|
| Q |
315 |
gtcattgaggggcctttctctgaagaattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagca |
399 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20188092 |
gtcattgaggggcccttctctgaacaattgtttaataaattgtgtagaactaaaccatttaattgtgagaaatagaatggaagca |
20188008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 51091705 - 51091612
Alignment:
| Q |
17 |
aggacataatagaatcaatggataaatataaaatcactaaagaattgtttattgcactgaaactga----aatcaaaagaaaaatgcatgcacc |
106 |
Q |
| |
|
|||| ||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
51091705 |
aggatataatagaaacaattgatgaatataaaatcactaaagaattgtttattgcactgaaactgaaattaattaaaagaaaaatgcatgcacc |
51091612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 25613565 - 25613506
Alignment:
| Q |
340 |
aattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagca |
399 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
25613565 |
aattgtttaataaattgtgtagaagtaaaccatgaaattgtgagaaatagaatggaagca |
25613506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 340 - 399
Target Start/End: Complemental strand, 17722357 - 17722298
Alignment:
| Q |
340 |
aattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagca |
399 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
17722357 |
aattgtttaataaattgtatagaagtaaaccatgcaattgtgagaaatagaatggaagca |
17722298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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