View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6063_low_19 (Length: 414)

Name: NF6063_low_19
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6063_low_19
NF6063_low_19
[»] chr2 (7 HSPs)
chr2 (1-221)||(25306522-25306741)
chr2 (247-374)||(1016131-1016258)
chr2 (252-363)||(17304870-17304981)
chr2 (300-363)||(45033778-45033841)
chr2 (18-79)||(17308534-17308595)
chr2 (18-80)||(45034996-45035058)
chr2 (247-362)||(41602864-41602979)
[»] chr3 (4 HSPs)
chr3 (246-372)||(4607839-4607965)
chr3 (247-362)||(27682613-27682728)
chr3 (18-136)||(4608878-4608997)
chr3 (12-87)||(26667214-26667288)
[»] scaffold0251 (1 HSPs)
scaffold0251 (25-172)||(6069-6217)
[»] chr8 (7 HSPs)
chr8 (247-374)||(1173872-1173999)
chr8 (244-358)||(35674411-35674525)
chr8 (34-146)||(10885403-10885517)
chr8 (18-103)||(35673509-35673594)
chr8 (247-341)||(13857142-13857236)
chr8 (18-84)||(1174945-1175012)
chr8 (1-91)||(28220464-28220553)
[»] chr6 (5 HSPs)
chr6 (25-136)||(33869124-33869237)
chr6 (25-136)||(15868270-15868383)
chr6 (25-95)||(14620432-14620502)
chr6 (36-89)||(5378615-5378668)
chr6 (36-76)||(19645593-19645633)
[»] chr5 (7 HSPs)
chr5 (25-146)||(4895937-4896059)
chr5 (18-146)||(10412123-10412251)
chr5 (18-95)||(25502234-25502312)
chr5 (247-363)||(25503116-25503232)
chr5 (20-104)||(33689780-33689863)
chr5 (300-374)||(10411205-10411279)
chr5 (18-74)||(21637366-21637422)
[»] chr4 (7 HSPs)
chr4 (247-363)||(11810913-11811028)
chr4 (18-89)||(18807584-18807656)
chr4 (247-346)||(25053262-25053361)
chr4 (18-87)||(25054147-25054217)
chr4 (12-91)||(31337741-31337821)
chr4 (18-84)||(11809972-11810039)
chr4 (36-89)||(52520484-52520537)
[»] chr7 (6 HSPs)
chr7 (280-374)||(29925040-29925134)
chr7 (18-91)||(21631452-21631526)
chr7 (27-88)||(44963050-44963110)
chr7 (18-91)||(9878369-9878442)
chr7 (36-89)||(28124883-28124936)
chr7 (36-89)||(4895467-4895520)
[»] chr1 (3 HSPs)
chr1 (25-91)||(3284427-3284493)
chr1 (25-89)||(9311956-9312020)
chr1 (1-85)||(13046332-13046413)
[»] scaffold0245 (1 HSPs)
scaffold0245 (20-91)||(11024-11095)
[»] scaffold0060 (1 HSPs)
scaffold0060 (18-104)||(9190-9276)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 25306741 - 25306522
Alignment:
Q  1 ctcaaacactctaattaactatattctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaaattacaattta 100  Q
    |||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25306741 ctcaaacactctaactaactatattctaatagttccc-tcaaactcaaagtgggaaaattcaccaatttgagtttgaaatacaatgaaaattacaattta 25306643  T
Q  101 ttcatactaaagtaactagataaaattgggggtaaaactaacaaatagcttaaaatatatgaaaacataggaaaccatattgaagcccagcaagactgaa 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25306642 ttcatactaaagtaactaggtaaaattgggggtaaaactaacaaatagcttaaaatatatgaaaacataggaaaccatattgaagcccagcaagactgat 25306543  T
Q  201 gatgaagcccacgccttgctg 221  Q
    |||  ||||||||||||||||    
T  25306542 gatttagcccacgccttgctg 25306522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 247 - 374
Target Start/End: Complemental strand, 1016258 - 1016131
Alignment:
Q  247 gtattgatgatgagatgcttcgaattcttgattgcggcttcagaaactgtgacctcagattcgcgattgttcgaattcgttgatttggcagaaacgatca 346  Q
    |||| |||||||||||||||||| | ||||| ||| |||||||||||   ||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  1016258 gtatcgatgatgagatgcttcgattgcttgaatgctgcttcagaaacatggaaatcagattcgcgattgttcgaattcgttgatttggcagaaacgatca 1016159  T
Q  347 actccgaatcaagaatcgttgttttctg 374  Q
    |||||||||||| ||||| |||||||||    
T  1016158 actccgaatcaaaaatcggtgttttctg 1016131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 252 - 363
Target Start/End: Complemental strand, 17304981 - 17304870
Alignment:
Q  252 gatgatgagatgcttcgaattcttgattgcggcttcagaaactgtgacctcagattcgcgattgttcgaattcgttgatttggcagaaacgatcaactcc 351  Q
    ||||||||||||| |||| | |||||  ||||||||||||||   || ||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  17304981 gatgatgagatgcatcgattgcttgaacgcggcttcagaaacatggaactcagattcacgattgttcgaattcgttgatttgccagaaacgatcaactcc 17304882  T
Q  352 gaatcaagaatc 363  Q
    ||||||||||||    
T  17304881 gaatcaagaatc 17304870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 45033841 - 45033778
Alignment:
Q  300 ctcagattcgcgattgttcgaattcgttgatttggcagaaacgatcaactccgaatcaagaatc 363  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  45033841 ctcagattcacgattgttcgaattcgttgatttggcagaaacgatcaactctgattcaagaatc 45033778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 17308595 - 17308534
Alignment:
Q  18 actatattctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaa 79  Q
    |||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||    
T  17308595 actatattctaatagtccccctcaaactcaaaatggggaaattcaccaatttgagtttgaaa 17308534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 45035058 - 45034996
Alignment:
Q  18 actatattctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaat 80  Q
    |||||| ||||||||||||||||||||||||| | || ||||| |||||||||||||||||||    
T  45035058 actatactctaatagtccccctcaaactcaaaatagggaaattcaccaatttgagtttgaaat 45034996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 362
Target Start/End: Complemental strand, 41602979 - 41602864
Alignment:
Q  247 gtattgatgatgagatgcttcgaattcttgattgcggcttcagaaactgtgacctcagattcgcgattgttcgaattcgttgatttggcagaaacgatca 346  Q
    |||| ||||||||||||||||||||||||||| || |||||| ||| | ||| |||||| |||| ||   |||| ||||  ||||||||||||||| | |    
T  41602979 gtatcgatgatgagatgcttcgaattcttgatcgcagcttcaaaaagtatgaactcagagtcgcaatgtgtcgatttcgcggatttggcagaaacggtga 41602880  T
Q  347 actccgaatcaagaat 362  Q
    ||| | ||||||||||    
T  41602879 acttcaaatcaagaat 41602864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 246 - 372
Target Start/End: Complemental strand, 4607965 - 4607839
Alignment:
Q  246 tgtattgatgatgagatgcttcgaattcttgattgcggcttcagaaactgtgacctcagattcgcgattgttcgaattcgttgatttggcagaaacgatc 345  Q
    |||| |||||||||||||||||||||||||||| |||||| |||||||| ||| ||| |||| | ||||||||||||||||||||||| |||||||||||    
T  4607965 tgtagtgatgatgagatgcttcgaattcttgatcgcggctacagaaactatgaactcggatttgggattgttcgaattcgttgatttgacagaaacgatc 4607866  T
Q  346 aactccgaatcaagaatcgttgttttc 372  Q
    |||||||||||| |||||| |||||||    
T  4607865 aactccgaatcaggaatcggtgttttc 4607839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 247 - 362
Target Start/End: Complemental strand, 27682728 - 27682613
Alignment:
Q  247 gtattgatgatgagatgcttcgaattcttgattgcggcttcagaaactgtgacctcagattcgcgattgttcgaattcgttgatttggcagaaacgatca 346  Q
    |||| |||||||||||||||||| | |||||   |||||||| ||||   || |||||||||||||||||||||||||||||||||||||||||||||||    
T  27682728 gtatcgatgatgagatgcttcgattgcttgaacacggcttcaaaaacatggaactcagattcgcgattgttcgaattcgttgatttggcagaaacgatca 27682629  T
Q  347 actccgaatcaagaat 362  Q
    |||| |||||||||||    
T  27682628 actctgaatcaagaat 27682613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 4608997 - 4608878
Alignment:
Q  18 actatattctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaaattacaat--ttattcatactaaagtaa 115  Q
    |||||| ||||||||||||||||||||||||| ||| |||||| || ||||||||||||| |||| ||| ||||||||||  ||||||| ||| ||||||    
T  4608997 actatactctaatagtccccctcaaactcaaaatggaaaaattcactaatttgagtttgagatactatg-aaattacaatgattattcaaacttaagtaa 4608899  T
Q  116 ctagataaaattgggggtaaa 136  Q
    ||   ||||||||||||||||    
T  4608898 ctgtgtaaaattgggggtaaa 4608878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 26667214 - 26667288
Alignment:
Q  12 taattaactatattctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttg-aaatacaatga 87  Q
    ||||| |||||| | ||||||||||||||||||||||  ||| |||||| ||||||||||||||| |||||||||||    
T  26667214 taattcactatactgtaatagtccccctcaaactcaa--tggaaaaattcaccaatttgagtttgaaaatacaatga 26667288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 6217 - 6069
Alignment:
Q  25 tctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaaattacaat--ttattcatactaaagtaactagata 122  Q
    ||||||||||||||||||||||||| |||| ||| | ||||||||||||||||||||||| | |||||||| |  ||||||||||| ||| |||||  ||    
T  6217 tctaatagtccccctcaaactcaaaatggggaaaatcaccaatttgagtttgaaatacaacg-aaattacattgattattcatactgaagaaactaagta 6119  T
Q  123 aaattgggggtaaaactaacaaatagcttaaaatatatgaaaacatagga 172  Q
    ||||||||||||||||||||||||  ||||||| |||||||| |||||||    
T  6118 aaattgggggtaaaactaacaaatgacttaaaagatatgaaagcatagga 6069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 247 - 374
Target Start/End: Complemental strand, 1173999 - 1173872
Alignment:
Q  247 gtattgatgatgagatgcttcgaattcttgattgcggcttcagaaactgtgacctcagattcgcgattgttcgaattcgttgatttggcagaaacgatca 346  Q
    ||||||||||||||||||||||| | |||||  ||||||||| ||||   || ||||||||||||||||||||||||||||||||||| |||||||||||    
T  1173999 gtattgatgatgagatgcttcgattgcttgaacgcggcttcaaaaacatggaactcagattcgcgattgttcgaattcgttgatttggaagaaacgatca 1173900  T
Q  347 actccgaatcaagaatcgttgttttctg 374  Q
    |||  ||||||||||||  |||||||||    
T  1173899 actttgaatcaagaatctgtgttttctg 1173872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 244 - 358
Target Start/End: Original strand, 35674411 - 35674525
Alignment:
Q  244 actgtattgatgatgagatgcttcgaattcttgattgcggcttcagaaactgtgacctcagattcgcgattgttcgaattcgttgatttggcagaaacga 343  Q
    |||||||  |||||||||||||| ||||||||||| ||| ||||| ||||||||| |||||| |||  ||||||||||||| | ||||||||||||||||    
T  35674411 actgtatcaatgatgagatgcttggaattcttgatcgcgacttcaaaaactgtgaactcagagtcgtaattgttcgaattcatggatttggcagaaacga 35674510  T
Q  344 tcaactccgaatcaa 358  Q
    |||||| ||||||||    
T  35674511 tcaacttcgaatcaa 35674525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 10885517 - 10885403
Alignment:
Q  34 ccccctcaaactcaaagtgggaaaatttaccaattt-gagtttgaaatacaatgaaaattacaatttattcatactaaagtaactagataaaattggg-g 131  Q
    ||||||||||||||||||||| ||||| |||||||| |||||||||||| |||| |||||||||||| || ||||| |||||||||  ||||||||||      
T  10885517 ccccctcaaactcaaagtggggaaattcaccaattttgagtttgaaataaaatggaaattacaatttgtttatactgaagtaactaagtaaaattgggta 10885418  T
Q  132 gtaaaactaacaaat 146  Q
    ||||||||| |||||    
T  10885417 gtaaaactagcaaat 10885403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 35673509 - 35673594
Alignment:
Q  18 actatattctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaaattacaatttattc 103  Q
    |||||| |||| |||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| || |  ||||||||||||    
T  35673509 actatactctattagtccccctcaaactcaaaatggggaaatttaccaatttgagtttgaaatgcaaggacacatacaatttattc 35673594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 341
Target Start/End: Complemental strand, 13857236 - 13857142
Alignment:
Q  247 gtattgatgatgagatgcttcgaattcttgattgcggcttcagaaactgtgacctcagattcgcgattgttcgaattcgttgatttggcagaaac 341  Q
    |||| |||||||||||||||| ||||| |||| |||| |||||||||||||| |||||| ||||||||  |||||||  | ||||||||||||||    
T  13857236 gtatcgatgatgagatgcttcaaattcctgatcgcgggttcagaaactgtgaactcagagtcgcgatttgtcgaatttttggatttggcagaaac 13857142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 1175012 - 1174945
Alignment:
Q  18 actatattctaatagtccccctcaaactcaaagtgggaaaatttaccaa-tttgagtttgaaatacaa 84  Q
    |||||| ||||||||||| ||||||||||||| ||| |||||| ||||| ||||||||||||||||||    
T  1175012 actatactctaatagtcctcctcaaactcaaaatggaaaaattcaccaattttgagtttgaaatacaa 1174945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 28220464 - 28220553
Alignment:
Q  1 ctcaaacactctaattaactatattctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaaat 91  Q
    |||||| | ||||| |||||||||| ||||||||| | ||||||| ||| ||||||| |||||||||| ||  ||| ||||||||||||||    
T  28220464 ctcaaagattctaactaactatattgtaatagtcctcttcaaactaaaaatgggaaa-tttaccaattcgaaattggaatacaatgaaaat 28220553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 25 - 136
Target Start/End: Complemental strand, 33869237 - 33869124
Alignment:
Q  25 tctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaaattacaat--ttattcatactaaagtaactagata 122  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||| ||||||  |||||||||||| ||||||||  ||    
T  33869237 tctaatagtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaaaacaatgaaaaatacaatgattattcatactagagtaactaagta 33869138  T
Q  123 aaattgggggtaaa 136  Q
    |||| |||||||||    
T  33869137 aaatagggggtaaa 33869124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 136
Target Start/End: Complemental strand, 15868383 - 15868270
Alignment:
Q  25 tctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaaattacaat--ttattcatactaaagtaactagata 122  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||||| ||||||  |||||||||||| ||||||||  ||    
T  15868383 tctaatagtccccctcaaactcaaaatggggaaattcaccaatttgagtttgaaaaacaatgaaaaatacaatgattattcatactagagtaactaagta 15868284  T
Q  123 aaattgggggtaaa 136  Q
    || | |||||||||    
T  15868283 aactagggggtaaa 15868270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 14620502 - 14620432
Alignment:
Q  25 tctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaaattaca 95  Q
    ||||||||||||||||||| | ||| |||| ||||| ||||||||||||||||||||||||||||| ||||    
T  14620502 tctaatagtccccctcaaatttaaaatggggaaattcaccaatttgagtttgaaatacaatgaaaaataca 14620432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 5378668 - 5378615
Alignment:
Q  36 ccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaa 89  Q
    |||||||||||||| |||| ||||| ||||||||||| ||| ||||||||||||    
T  5378668 ccctcaaactcaaaatggggaaattcaccaatttgagattggaatacaatgaaa 5378615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 19645593 - 19645633
Alignment:
Q  36 ccctcaaactcaaagtgggaaaatttaccaatttgagtttg 76  Q
    |||||||||||||| |||| ||||| |||||||||||||||    
T  19645593 ccctcaaactcaaaatggggaaattcaccaatttgagtttg 19645633  T

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Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 25 - 146
Target Start/End: Original strand, 4895937 - 4896059
Alignment:
Q  25 tctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaaattacaatttattcatactaaagtaactagataaa 124  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| |||||||||||| || || || |||||||||  ||||    
T  4895937 tctaatagtccccctcaaactcaaaatggggaaattcaccaatttgagtttgaaatacaatggaaattacaatttgtttatcctgaagtaactaagtaaa 4896036  T
Q  125 attgggg-gtaaaactaacaaat 146  Q
    ||||||| ||||||||| |||||    
T  4896037 attggggagtaaaactagcaaat 4896059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 10412251 - 10412123
Alignment:
Q  18 actatattctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaaattacaat--ttattcatactaaagtaa 115  Q
    |||||| ||||||||||||||||||||||||| | |  ||| ||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||    
T  10412251 actatactctaatagtccccctcaaactcaaaattgagaaaattaccaatttgagtttgaaatacaatg-aaattacaatgattattcatactaaagtaa 10412153  T
Q  116 ctagataaaattgggggtaaaactaacaaat 146  Q
    | |  ||||| | |||||||||||| |||||    
T  10412152 ccaactaaaa-taggggtaaaactagcaaat 10412123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 25502234 - 25502312
Alignment:
Q  18 actatattctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttg-aaatacaatgaaaattaca 95  Q
    |||||| ||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |||||||||||||| ||||    
T  25502234 actatactctaatagtccccctcaaactcaaaatggggaaattcaccaatttgagtttgaaaatacaatgaaaaataca 25502312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 247 - 363
Target Start/End: Original strand, 25503116 - 25503232
Alignment:
Q  247 gtattgatgatgagatgcttcgaattcttgattgcggcttcagaaactgtgacctcagattcgcgattgttcgaattcgttgatttggcagaaacgatca 346  Q
    |||| ||||||||||||||| || | |||||   ||||||||||||    || ||||||||| || ||||||||||| ||||||||||||||||| ||||    
T  25503116 gtatcgatgatgagatgctttgattgcttgaactcggcttcagaaatatggaactcagattcacggttgttcgaatttgttgatttggcagaaacaatca 25503215  T
Q  347 actccgaatcaagaatc 363  Q
    |||| ||||||||||||    
T  25503216 actctgaatcaagaatc 25503232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 33689863 - 33689780
Alignment:
Q  20 tatattctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaaattacaatttattca 104  Q
    |||| ||||||||||||| ||||||||||| |||| ||||| |||||||||||||||||| ||||||||||| |||| |||||||    
T  33689863 tatactctaatagtcccc-tcaaactcaaaatggggaaattcaccaatttgagtttgaaacacaatgaaaatgacaaattattca 33689780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 374
Target Start/End: Complemental strand, 10411279 - 10411205
Alignment:
Q  300 ctcagattcgcgattgttcgaattcgttgatttggcagaaacgatcaactccgaatcaagaatcgttgttttctg 374  Q
    ||||||||| ||||||||| || |||||||||||||||||||||||| ||| || |||||||||  |||||||||    
T  10411279 ctcagattcacgattgttcaaaatcgttgatttggcagaaacgatcatctctgactcaagaatctgtgttttctg 10411205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 21637366 - 21637422
Alignment:
Q  18 actatattctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtt 74  Q
    |||||| ||||||||||||||||||||||||  | |  ||||| |||||||||||||    
T  21637366 actatactctaatagtccccctcaaactcaagattgagaaattcaccaatttgagtt 21637422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 247 - 363
Target Start/End: Original strand, 11810913 - 11811028
Alignment:
Q  247 gtattgatgatgagatgcttcgaattcttgattgcggcttcagaaactgtgacctcagattcgcgattgttcgaattcgttgatttggcagaaacgatca 346  Q
    |||| |||||||||||||||||| | |||||  ||||||||| ||||   || ||||||||||||||||||||||||||||||||||||||||| |||||    
T  11810913 gtatcgatgatgagatgcttcgattgcttgaacgcggcttcaaaaacatggaactcagattcgcgattgttcgaattcgttgatttggcagaaa-gatca 11811011  T
Q  347 actccgaatcaagaatc 363  Q
    |||| ||||||||||||    
T  11811012 actctgaatcaagaatc 11811028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 18807584 - 18807656
Alignment:
Q  18 actatattctaatagtccccctcaaactcaaagtgggaaaatttaccaa-tttgagtttgaaatacaatgaaa 89  Q
    |||||| ||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||    
T  18807584 actatactctaatagtccccctcaaactcaaaatgggaaaattcaccaattttgagtttgaaatacaatgaaa 18807656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 247 - 346
Target Start/End: Complemental strand, 25053361 - 25053262
Alignment:
Q  247 gtattgatgatgagatgcttcgaattcttgattgcggcttcagaaactgtgacctcagattcgcgattgttcgaattcgttgatttggcagaaacgatca 346  Q
    |||| ||||||||||| | |||| |||||| |  | |||||||||||   || |||||||||||||||||||||| |||||||||||||| |||||||||    
T  25053361 gtatcgatgatgagattcgtcgagttcttggtctcagcttcagaaacctggaactcagattcgcgattgttcgaaatcgttgatttggcaaaaacgatca 25053262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 25054217 - 25054147
Alignment:
Q  18 actatattctaatagtccccctcaaactcaaagt-gggaaaatttaccaatttgagtttgaaatacaatga 87  Q
    |||||| |||||||||||||||| |||||||| | ||| ||||| ||||||||||||||||||||||||||    
T  25054217 actatactctaatagtccccctcgaactcaaaattggggaaattcaccaatttgagtttgaaatacaatga 25054147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 31337821 - 31337741
Alignment:
Q  12 taattaactatattctaatagtc-cccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaaat 91  Q
    |||||||||| | | |||||||| |||||||||||||||||||  ||||| |||||||| |||||||||| ||||||||||    
T  31337821 taattaactacaatgtaatagtcacccctcaaactcaaagtggagaaattcaccaatttaagtttgaaatgcaatgaaaat 31337741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 11809972 - 11810039
Alignment:
Q  18 actatattctaatagtccccctcaaactcaaagtgggaaaatttaccaa-tttgagtttgaaatacaa 84  Q
    |||||| ||||||||||||||||||||| ||| |||| ||||| ||||| ||||||||||||||||||    
T  11809972 actatactctaatagtccccctcaaacttaaaatggggaaattcaccaattttgagtttgaaatacaa 11810039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 52520537 - 52520484
Alignment:
Q  36 ccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaa 89  Q
    |||||||||||||| |||| ||||| ||||||||||| ||| ||||||||||||    
T  52520537 ccctcaaactcaaaatggggaaattcaccaatttgagcttggaatacaatgaaa 52520484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 280 - 374
Target Start/End: Complemental strand, 29925134 - 29925040
Alignment:
Q  280 gcggcttcagaaactgtgacctcagattcgcgattgttcgaattcgttgatttggcagaaacgatcaactccgaatcaagaatcgttgttttctg 374  Q
    ||||||||||||||   || ||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| | |||||||||    
T  29925134 gcggcttcagaaacatggaactcagattcgcgattgttcgaattcattgattttgcagaaaccatcaactccgaatcaagaattggtgttttctg 29925040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 21631452 - 21631526
Alignment:
Q  18 actatattctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttg-aaatacaatgaaaat 91  Q
    |||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| |||||||    
T  21631452 actatactctaatagtccccctcaaactcaaaatgggaaaattcaccaatttgagtttgaaaatacagtgaaaat 21631526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 44963110 - 44963050
Alignment:
Q  27 taatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaa 88  Q
    |||||| | |||||||||||||| |||||||||| || ||||||||||||||||||||||||    
T  44963110 taatagcctccctcaaactcaaaatgggaaaattcac-aatttgagtttgaaatacaatgaa 44963050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 9878369 - 9878442
Alignment:
Q  18 actatattctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaaat 91  Q
    |||||| ||||||||||| ||||||||||||| |||| ||| | | |||||||| ||||| |||||| ||||||    
T  9878369 actatactctaatagtcctcctcaaactcaaaatggggaaactcatcaatttgaatttgatatacaaagaaaat 9878442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 28124883 - 28124936
Alignment:
Q  36 ccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaa 89  Q
    |||||||||||||| |||| ||||| ||||||||||| ||| ||||||||||||    
T  28124883 ccctcaaactcaaaatggggaaattcaccaatttgagcttggaatacaatgaaa 28124936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 4895520 - 4895467
Alignment:
Q  36 ccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaa 89  Q
    |||||||||||||| |||| ||| | ||||||||||| ||| ||||||||||||    
T  4895520 ccctcaaactcaaaatggggaaaatcaccaatttgagcttggaatacaatgaaa 4895467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 3284493 - 3284427
Alignment:
Q  25 tctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaaat 91  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  3284493 tctaatagtccccctcaaactcaaagtgggaaaactcaccaatttgagtttgaaatacaatgaaaat 3284427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 9312020 - 9311956
Alignment:
Q  25 tctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaa 89  Q
    |||||||||||||||||||||||||||||  || || ||||||||||||||||||||| ||||||    
T  9312020 tctaatagtccccctcaaactcaaagtggagaatttcaccaatttgagtttgaaataccatgaaa 9311956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 13046413 - 13046332
Alignment:
Q  1 ctcaaacactctaattaactatattctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaat 85  Q
    |||||||||| ||| |||||||| | ||||||||||  ||| ||| ||| ||||||| |||| ||||||||||||||||||||||    
T  13046413 ctcaaacactttaactaactatagtataatagtccc--tcatactgaaaatgggaaa-tttatcaatttgagtttgaaatacaat 13046332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 11095 - 11024
Alignment:
Q  20 tatattctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaaat 91  Q
    |||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  11095 tatactctaatagtccccttcaaactcaaagtgggaaaattcaccaatttgagtttgaaatactatgaaaat 11024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 9190 - 9276
Alignment:
Q  18 actatattctaatagtccccctcaaactcaaagtgggaaaatttaccaatttgagtttgaaatacaatgaaaattacaatttattca 104  Q
    |||||| ||||||||||| ||||||||||||  | |  ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9190 actatactctaatagtcctcctcaaactcaagattgagaaattcaccaatttgagtttgaaatacaatgaaaattacaatttattca 9276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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