View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_low_20 (Length: 410)
Name: NF6063_low_20
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 402
Target Start/End: Complemental strand, 314744 - 314359
Alignment:
| Q |
17 |
cttcatagggttacattgccttaagacagcaataaggtgtgcttgatcaatgccatgccgatacccttttccaatgattaagagatgttttgcttgatgg |
116 |
Q |
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| T |
314744 |
cttcatagggttacattgccttaagacagcaataaggtgtgcttgatcaatgccatgccgatacccttttccaatgattaagagatgttttgcttgatgg |
314645 |
T |
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| Q |
117 |
catgatgctatgacaattgcttagcaatttttgtgtatttgttaagtaccaatgaaaatcttcagagaatggaaactggtgatgctgtgcatacatgttt |
216 |
Q |
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| T |
314644 |
catgatgctatgacaattgcttagcaatttttgtgtatttgttaagtaccaatgaaaatcttcagagaatggaaactggtgatgctgtgcatacatgttt |
314545 |
T |
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| Q |
217 |
cgaaatcttctgttatgaacaagaacattaaannnnnnnnnnnnatcgacgctttttgtttggagaacctgcaaactgtggccttgtgctttatgtttgg |
316 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
314544 |
cgaattcttctgttatgaacaagaacattaaatttttcttttttatcgacgctttttgtttggagaacctgcaaattgtggccttgtgctttatgtttgg |
314445 |
T |
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| Q |
317 |
agaacctgcaaattttgtgaccttgtgaattgtgatcatgaacatgtttctatctacatttttaccttctctaattgcagaataat |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
314444 |
agaacctgcaaattttgtgaccttgtgaattgtgatcatgaacatgtttctatctacatttttaccttctcgaattgcagaataat |
314359 |
T |
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