View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6063_low_22 (Length: 399)
Name: NF6063_low_22
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 5 - 383
Target Start/End: Original strand, 44622647 - 44623025
Alignment:
| Q |
5 |
gcagagacaatggcaccaattagagcagtttccaaagcactcctgattggtttgttgccggtgaaggatcccttgacaaagccaaagataagcaaagcaa |
104 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44622647 |
gcagaggcaatggcaccaattagagcagtttccaaagcactcctgattggcttgttgccggtgaaggatcccttgacaaagccaaagataagcaaagcaa |
44622746 |
T |
|
| Q |
105 |
tcaatgtaaccaccactgaaacaagaacagcctctgatgcatttggaatgaacatgtaaggaatgagaggaacaattccacccaatacgtaagcaatagc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44622747 |
tcaatgtaaccaccactgaaacaagaacagcctctgatgcatttcgaatgaacatgtaaggaatgagaggaacaattccacccaatacgtaagcaatagc |
44622846 |
T |
|
| Q |
205 |
aattgtcattgcactatacaatgctcttctcggatctggcttctctagtcccaactcaaacctgccacgccaagtaaccaatttgttaattaatttgttc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44622847 |
aattgtcattgcactatacaatgctcttctcggatctggcttctctagtcccaactcaaacctgccacgccaagtaaccaatttgttaattaatttgttc |
44622946 |
T |
|
| Q |
305 |
aatcagtcacaaattcactaagttatcttctattgtagaaattaattcatatttttgaggaagcaggtattgtagaaac |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44622947 |
aatcagtcacaaattcactaagttatcttctattgtagaaattaattcatatttttgaggaagcaggtattgtagaaac |
44623025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 44634133 - 44634430
Alignment:
| Q |
12 |
caatggcaccaattagagcagtttccaaagcactcctgattggtttgttgccggtgaaggatcccttgacaaagccaaagataagcaaagcaatcaatgt |
111 |
Q |
| |
|
||||||| || || ||||||||||| |||||||| |||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44634133 |
caatggcgccgatgagagcagtttcgaaagcacttttgataggtttgctgccggtgaagcatcccttgacaaagccaaagataagcaaagcaatcaatgt |
44634232 |
T |
|
| Q |
112 |
aaccaccactgaaacaagaacagcctctgatgcatttggaatgaacatgtaaggaatgagaggaacaattccacccaatacgtaagcaatagcaattgtc |
211 |
Q |
| |
|
|| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44634233 |
aaaaattactgaaaaaagaacagcctctgatgcatttggaatgaacatgtaaggaatgagaggaacaattccacccaatatgtaagcaatagcaattgtc |
44634332 |
T |
|
| Q |
212 |
attgcactatacaatgctcttctcggatctggcttctctagtcccaactcaaacctgccacgcca---agtaaccaatttgttaattaatttgttcaa |
306 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||| |||||||||| |||||| |||||| |||| ||||| |||||||||||||||||||||||| |
|
|
| T |
44634333 |
attgcactgcacaatgctctcattggatctggcttttctagtcccagctcaaatctgccatgccatcgagtaagcaatttgttaattaatttgttcaa |
44634430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University