View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_low_23 (Length: 398)
Name: NF6063_low_23
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 37983832 - 37983461
Alignment:
| Q |
18 |
aaatctaagtaatataaccaagacgacaacacaacattcaattggataactaatcaaccaatgataacaaacaaaaaacattggctttaaatgaataatg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37983832 |
aaatctaagtaatataaccaagacgacaacacaacattcaattggataactaatcacgcaatgataacaaacaaaaaacattggctttaaatggataatg |
37983733 |
T |
|
| Q |
118 |
actaaaaaaggactaaatttgttctccatgctaaatgaaagagtagcagtgtctcactgataacaactaatatagtgtctcactaaatctgttcttcatt |
217 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37983732 |
actaaaagaggactaaatttgttctccatgctgaatgaaagagtagcagtgcctcactgataacaactaatatagtgtctcactaaatctgttcttcatt |
37983633 |
T |
|
| Q |
218 |
ttttgtgtttctgctatatagttatcatttatttggtgaaaagaaatccaaagttgcacatgaggaaccaatccaacattgccataagcttactgccata |
317 |
Q |
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|
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37983632 |
ttttgtgtttctgctatatagttat-atttatttggtgaaaagaaatccgaagttgcacatgaggaaccaatccaacattgccataagcttacttccata |
37983534 |
T |
|
| Q |
318 |
ttcacatgtgttctatgaaggcatttaactcaacttgtggtaactaatgcatagaagccaatccattcatctc |
390 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37983533 |
ttcacatgtgttctatgaaggcatttaactcaacttgtggtaactaatgcatagaagccaatccattcatctc |
37983461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 17688594 - 17688220
Alignment:
| Q |
18 |
aaatctaagtaatataaccaagacgacaacacaacattcaattggataa-ctaatcaaccaatgataacaaacaaaaaa-cattggctttaaatgaataa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| |||| |
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| T |
17688594 |
aaatctaagtaatataaccaagacgacaacacaacattcaattggataaactaatcaagcaatgataacaaacaaaaaaacattggctttaaatggataa |
17688495 |
T |
|
| Q |
116 |
tgactaaaaaaggactaaatttgttctccatgctaaatgaaagagtagcagtgtctcactgataacaactaatatagtgtctcactaaatctgttcttca |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
17688494 |
tgactaaaaaaggactaaatttgttctccatgctgaatgaaagagtagcagtgcctcactaataacaactaatgtagtgtctcactaaatctgttcttca |
17688395 |
T |
|
| Q |
216 |
ttttttgtgtttctgctatatagttatcatttatttggtgaaaagaaatccaaagttgcacatgaggaaccaatccaacattgccataagcttactgcca |
315 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17688394 |
ttttttgtgtttctgctatatagttatcatttatttggtgtaaagaaatccgaagttgcacatgaggaaccaatccaacattgccataagcttacttcca |
17688295 |
T |
|
| Q |
316 |
tattcacatgtgttctatgaaggcatttaactcaacttgtggtaactaatgcatagaagccaatccattcatctc |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17688294 |
tattcacatgtgttctatgaaggcatttaactcaacttgtggtaactaatgcatagaagccaatccattcatctc |
17688220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 31686629 - 31686553
Alignment:
| Q |
18 |
aaatctaagtaatataaccaagacgacaacacaacattcaattggataactaatcaaccaatgataacaaacaaaaa |
94 |
Q |
| |
|
|||||||||||||||||||| ||| ||| | |||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
31686629 |
aaatctaagtaatataaccatgacaacagcccaacattcaattggataactaatcaagcaatgataacaaacaaaaa |
31686553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 22000242 - 22000634
Alignment:
| Q |
18 |
aaatctaagtaatataaccaagacgacaacacaacattcaattggataactaatcaaccaatgataacaaacaaaaaacattggctttaaatga------ |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||| |
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| T |
22000242 |
aaatctaagtaatataaccaagacgacaacacaacattcaattggataactaattaagcaatgataacaaagaaaaaacattggctttaaatgagaatta |
22000341 |
T |
|
| Q |
112 |
--------------ataatgactaaaaaaggactaaatttgttctccatgctaaatgaaagagtagcagtgtctcactgataacaactaatatagtgtct |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||| |||||||| |
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|
| T |
22000342 |
tgcaattctcattgataatgactaaaaaaggactaaatttgttctccatgctgaatgaaagagtaacagtgcctcactgataacaactaatgtagtgtct |
22000441 |
T |
|
| Q |
198 |
cactaaatctgttcttcattttttgtgtttctgctatatagttatcatttatttggtgaaaagaaatccaaagttgcacatgaggaaccaatccaacatt |
297 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22000442 |
cactaaatttgttcttcattttttgtgtttctgctatatagttatcatttatttggtgaaaagaaatccgaagttgcacatgaggaaccaatccaacatt |
22000541 |
T |
|
| Q |
298 |
gccataagcttactgccatattcacatgtgttctatgaaggcatttaactcaacttgtggtaactaatgcatagaagccaatccattcatctc |
390 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22000542 |
gccataagcttacttccatattcacatgtgttctatgaaggcatttaactcaacttgtggtagctaatgcatagaagccaatccattcatctc |
22000634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 254 - 390
Target Start/End: Complemental strand, 6724039 - 6723903
Alignment:
| Q |
254 |
tgaaaagaaatccaaagttgcacatgaggaaccaatccaacattgccataagcttactgccatattcacatgtgttctatgaaggcatttaactcaactt |
353 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||| ||||||||||||| |||| |||| |||| | ||| | | | ||| || ||| || |
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| T |
6724039 |
tgaaaagaaaactaaagttgcacatgaggaaccaatccaactacaccataagcttacttccatcttcaaatgtatgctaatatgccgttttacacaattt |
6723940 |
T |
|
| Q |
354 |
gtggtaactaatgcatagaagccaatccattcatctc |
390 |
Q |
| |
|
|||||||| ||| |||||||||||| ||||||||||| |
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|
| T |
6723939 |
gtggtaacaaattcatagaagccaacccattcatctc |
6723903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 48848382 - 48848458
Alignment:
| Q |
18 |
aaatctaagtaatataaccaagacgacaacacaacattcaattggataactaatcaaccaatgataacaaacaaaaa |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
48848382 |
aaatctaagtaatataaccaagacgacaacacaacattcaattggataactaatcaagcaatgataacaaacaaaaa |
48848458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 1263601 - 1263525
Alignment:
| Q |
18 |
aaatctaagtaatataaccaagacgacaacacaacattcaattggataactaatcaaccaatgataacaaacaaaaa |
94 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
1263601 |
aaatctaagtaatataaccaagacaacaacacaacattcaattggataactaatcaagcaatgataacaaacaaaaa |
1263525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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