View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_low_25 (Length: 386)
Name: NF6063_low_25
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 32980577 - 32980217
Alignment:
| Q |
1 |
caaaggatatgagtcttaacttcaagtaaaatcaattctgcagcaaaatcacttctactaaagaacaacaaaacatgttaaaatcaattttatacctaga |
100 |
Q |
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|||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32980577 |
caaaagatataaatcttaacttcaagtaaaatcaattctgcagcaaaatcacttctactaaaaaacaacaaaacatgttaaaatcaattttatacctaga |
32980478 |
T |
|
| Q |
101 |
atcaattttggcttgtccaaaagcgggaaccaaacatacactatactcactcacaaaacaataaacagctaccttaaatttaaattaacaaaaaccttcc |
200 |
Q |
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| T |
32980477 |
atcaattttggcttgtccaaaagcgggaaccaaacatacactatactcactcacaaaacaataaacagctaccttaaatttaaattaacaaa-------- |
32980386 |
T |
|
| Q |
201 |
ctcattg-ttttgaaaataagaactacattttttcatttacctacaaactcttccctcattgttatattcaatacataacacaacacgatgaatcaaaaa |
299 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32980385 |
---atagaaattgaaaataagaactacattttttcatttacctacaaactcttccctcattgttatattcaatacataacacaacacgatgaatcaaaaa |
32980289 |
T |
|
| Q |
300 |
ccttgattctccattcaaagaaacacatctagattaaaactaaatcaacataagagaaaccaccttctatct |
371 |
Q |
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| T |
32980288 |
ccttgattctccattcaaagaaaaacatctagattaaaactacatcaacataagagaaaccaccttctatct |
32980217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 232 - 367
Target Start/End: Complemental strand, 32981818 - 32981679
Alignment:
| Q |
232 |
ttcatttacctacaaactcttccctcattgttatattcaatacataacacaacacgatgaatcaaaa----accttgattctccattcaaagaaacacat |
327 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| | ||||||||||| ||||||||||| |||||||||||||| | ||| | |||||| |
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| T |
32981818 |
ttcatttacctacaaactcttccctcattgttatcttcaattcgtaacacaacaccatgaatcaaaatcaaaccttgattctccaataaaatatacacat |
32981719 |
T |
|
| Q |
328 |
ctagattaaaactaaatcaacataagagaaaccaccttct |
367 |
Q |
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| T |
32981718 |
ctagattaaaactaaatcaacataagagaaaccactttct |
32981679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 32981876 - 32981819
Alignment:
| Q |
211 |
tgaaaataagaactacattttttcatttacctacaaactcttccctcattgttatattc |
269 |
Q |
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| T |
32981876 |
tgaaaataagaactacattttt-catttacctacaaactcttccctcattgttatattc |
32981819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 2635178 - 2635084
Alignment:
| Q |
20 |
cttcaagtaaaatcaattctgcag-caaaatcacttctactaaagaacaacaaaacatgttaaaatcaattttatac--ctagaatcaattttgg |
111 |
Q |
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| T |
2635178 |
cttcaagcataatcaattctggaggcaaaatcagttctacttaaaagcaatcaaacatgtcaaaatcaattttacacttctagaatcaattttgg |
2635084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 578945 - 578872
Alignment:
| Q |
20 |
cttcaagtaaaatcaattctgca-gcaaaatcacttctactaaagaacaacaaaacatgttaaaatcaatttta |
92 |
Q |
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||||||||| ||||||||| || ||||||| | ||||||| || |||||| |||||||| ||||||||||||| |
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| T |
578945 |
cttcaagtagtatcaattctacaagcaaaattatttctacttaaaaacaactaaacatgtcaaaatcaatttta |
578872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 12306968 - 12306920
Alignment:
| Q |
43 |
gcaaaatcacttctactaaagaacaacaaaacatgttaaaatcaatttt |
91 |
Q |
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||||||||| ||||||| |||| |||| |||||||| |||||||||||| |
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| T |
12306968 |
gcaaaatcaattctactcaagagcaaccaaacatgtcaaaatcaatttt |
12306920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 3352093 - 3352021
Alignment:
| Q |
18 |
aacttcaagtaaaatcaattctgcag-caaaatcacttctactaaagaacaacaaaacatgttaaaatcaatt |
89 |
Q |
| |
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|||||||||||||||||||| || || ||| |||| ||||||| || |||||||||| |||| | |||||||| |
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| T |
3352093 |
aacttcaagtaaaatcaattatgaagacaagatcatttctactcaacaacaacaaaaaatgtcagaatcaatt |
3352021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 9943391 - 9943344
Alignment:
| Q |
66 |
caacaaaacatgttaaaatcaattttatacct--agaatcaattttgg |
111 |
Q |
| |
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|||| |||||||||||||||||||||| |||| |||||||||||||| |
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| T |
9943391 |
caaccaaacatgttaaaatcaattttacaccttcagaatcaattttgg |
9943344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 34387761 - 34387833
Alignment:
| Q |
18 |
aacttcaagtaaaatcaattctgcag-caaaatcacttctactaaagaacaacaaaacatgttaaaatcaatt |
89 |
Q |
| |
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|||||||||||||||||||| || || ||| |||| ||||||| || |||||||||| |||| | |||||||| |
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| T |
34387761 |
aacttcaagtaaaatcaattatgaagacaagatcatttctactcaacaacaacaaaaaatgtcagaatcaatt |
34387833 |
T |
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