View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6063_low_28 (Length: 361)
Name: NF6063_low_28
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 2377536 - 2377877
Alignment:
| Q |
1 |
tgaggaggagcagagaaggaagaaaactgtggaatctgttgtaatagtgaagaaatctcaactttctatgaatgaggctgaagactcttgtgcagacact |
100 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
2377536 |
tgaggaggaacagaaaaggaagaaaactgtggaatctgttgtaatagtgaagaaatctcaactttctatgaatgaggctgaaga---tcgtgcagacact |
2377632 |
T |
|
| Q |
101 |
aataatagtacatatgatgagacattacctgaaattgaagcaagattttgtgaaagaagtgtcctcataagactacattgtttgaagagtcaaggagtta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2377633 |
aataatagtacatatgatgagacattacctgaaattgaagcaagattttgtgaaagaagtgtcctcataagactacattgtttgaagagtcaaggagtta |
2377732 |
T |
|
| Q |
201 |
ttgagaaaattatgagtgaaattgagaaacttcatctaaaagtcatcaatagcagttccttgacttttgggaatttcacccttgatataaccatcattgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2377733 |
ttgagaaaattatgagtgaaattgagaaacttcatctaaaagtcatcaatagcagttccttgacttttgggaatttcacccttgatataaccatcattgc |
2377832 |
T |
|
| Q |
301 |
tcaggtaatttcactacaccgtcaccaaataataatcaatagaat |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2377833 |
tcaggtaatttcactacaccgtcaccaaataataatcaatagaat |
2377877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 309
Target Start/End: Complemental strand, 36766866 - 36766683
Alignment:
| Q |
126 |
tacctgaaattgaagcaagattttgtgaaagaagtgtcctcataagactacattgtttgaagagtcaaggagttattgagaaaattatgagtgaaattga |
225 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| ||||||||||||| | |||||| ||| | |||||||| | || |||| || ||||||| |
|
|
| T |
36766866 |
taccagaaattgaagcaagattttgtgatagaaatgtcctcataagagttcattgtgagaaaatcaaaggagttgtggaaaaaacaatccacaaaattga |
36766767 |
T |
|
| Q |
226 |
gaaacttcatctaaaagtcatcaatagcagttccttgacttttgggaatttcacccttgatataaccatcattgctcaggtaat |
309 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| | |||| ||||| | || | ||||||||||| || ||||| |||||||| |
|
|
| T |
36766766 |
gaaactcaatctaaaagtcaccaatagcagtttcatgacatttggaagttgtgcacttgatataacaattattgcacaggtaat |
36766683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University