View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_low_31 (Length: 352)
Name: NF6063_low_31
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 40788490 - 40788386
Alignment:
| Q |
10 |
accaccatcatcaatgtctaaggttcaataactcgttttcttatctacttctttcatttcacactcgcgcatatcaaatttcatccatgtcgcagaagaa |
109 |
Q |
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| T |
40788490 |
accaccatcatcaatgtctaaggttcaataactcgttttcttatcttcttctttcatttcacactcgcgcatatcaaatttcatccatgtcgcagaagaa |
40788391 |
T |
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| Q |
110 |
aaaga |
114 |
Q |
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| T |
40788390 |
aaaga |
40788386 |
T |
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Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 254 - 339
Target Start/End: Complemental strand, 40788252 - 40788167
Alignment:
| Q |
254 |
taagaagaacgagaataataaaaagaatgaaacgaaaccaactaacgtcattttgaaggtcgacatgcattgtgaaggttgttctt |
339 |
Q |
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| T |
40788252 |
taagaagaacgagaataataaaaataatgaaacgaaaccaactaacgtcattttgaaggtcgacatgcattgtgaaggttgttctt |
40788167 |
T |
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