View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_low_32 (Length: 348)
Name: NF6063_low_32
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 10 - 332
Target Start/End: Complemental strand, 3605132 - 3604810
Alignment:
| Q |
10 |
attattcttgcaactagctagatgaaatagcaaggactacatctgcaacttcaaatgaaatgtcagttctgaagctcgttacatgtgaccaaccagccat |
109 |
Q |
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| T |
3605132 |
attattcttgcaactagctagatgaaatagcaaggactacatctgcaacttcaaatgaaatgtcagttctgaagctcgttacatgtgaccaaccagccat |
3605033 |
T |
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| Q |
110 |
aacttcgcaggagggggacaatgtatcactcgctagccaacatccttttttatgttttcaataagaatcgatgttcgaatgttaacaaggactttgaaat |
209 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3605032 |
aacttcgcaggagggggacaatgtgtcactcgctagccaacatccttttttatgttttcaataagaatcgatgttcgaatgttaacaaggactttgaaat |
3604933 |
T |
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| Q |
210 |
cattcaacaagctctaacagacaccagcaacaacatagaagcacccttcattacgtatttatcgaagtcgcnnnnnnngaaggcaagtcgttcagtaatt |
309 |
Q |
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|||||||||||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| |
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| T |
3604932 |
cattcaacaagctctatcagataccagcagcaacacagaagcacccttcattacgtatttatcgaagtcgcaaaaaaagaagtcaagtcgttaagtaatt |
3604833 |
T |
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| Q |
310 |
aaaacccggtttcagggtcctcc |
332 |
Q |
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||| |||||||||| |||||||| |
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| T |
3604832 |
aaatcccggtttcaaggtcctcc |
3604810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 181 - 332
Target Start/End: Complemental strand, 55990344 - 55990192
Alignment:
| Q |
181 |
tgttcgaatgttaacaaggactttgaaatcattcaacaagctctaacagacaccagcaacaacatagaagcacccttcattacgtatttatcgaagtcgc |
280 |
Q |
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| T |
55990344 |
tgttcgaatgtgaacaaggacttagagatcattaagcaaactctaacagacaccagcagcaacccagaagcacccttcattatgtatttatcgaagtcgc |
55990245 |
T |
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| Q |
281 |
-nnnnnnngaaggcaagtcgttcagtaattaaaacccggtttcagggtcctcc |
332 |
Q |
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| T |
55990244 |
aaaaaaaagaaggcaagtcgctcaataattaaaacccggtctcagggtcctcc |
55990192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 18100397 - 18100314
Alignment:
| Q |
147 |
caacatccttttttatgttttcaataagaatcgatgttcgaatgttaacaaggactttgaaatcattcaacaagctctaacagac |
231 |
Q |
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||||||||| |||| | |||| |||||| |||| ||| ||| ||||||||| |||| || ||||||||||||||| |||||||| |
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| T |
18100397 |
caacatcctgtttt-tatttttaataagcatcgttgtccgattgttaacaaaaacttagatatcattcaacaagctttaacagac |
18100314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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