View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_low_41 (Length: 307)
Name: NF6063_low_41
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_41 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 3120740 - 3121034
Alignment:
| Q |
13 |
aatatagaccaatcgacgagcctgacttattgcatcaaagatatcatgccaacaatttccactctcataaataacatcatgatcacacccatcaaccctc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3120740 |
aatatagaccaatcgacgagcctgacttattgcatcaaagatatcttgccaacaatttccactctcataaataacatcatgatcaccaccatcaaccctc |
3120839 |
T |
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| Q |
113 |
aaaccaggaagacaaccttgtggaacatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaacgccttgataat |
212 |
Q |
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| T |
3120840 |
aaaccaggaagacaaccttgtggaacatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaacgccttgataat |
3120939 |
T |
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| Q |
213 |
cagaaccaacaccattgctataaagcgttatcttatcaataggagtatactgaattgataagctcaaaacggtttcggtcttgaagggttttcca |
307 |
Q |
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| T |
3120940 |
cagaaccaacaccattgctataaagcgttatcttatcaataggagtatactgaattgataagctcaaaacggtttcggtcttgaagggttttcca |
3121034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 3114884 - 3115178
Alignment:
| Q |
13 |
aatatagaccaatcgacgagcctgacttattgcatcaaagatatcatgccaacaatttccactctcataaataacatcatgatcacacccatcaaccctc |
112 |
Q |
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|||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||| |
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| T |
3114884 |
aatatataccaatcgtcgcgcctgacttattgcatcaaagatatcatgccaacaatttccactctcataactcaaatcatgatcaccaccatcaaccctc |
3114983 |
T |
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| Q |
113 |
aaaccaggaagacaaccttgtggaacatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaacgccttgataat |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||| |
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| T |
3114984 |
aaactaggaagacaaccttgtggaacatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaagtatgtagcaggaacaccttgaaaat |
3115083 |
T |
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| Q |
213 |
cagaaccaacaccattgctataaagcgttatcttatcaataggagtatactgaattgataagctcaaaacggtttcggtcttgaagggttttcca |
307 |
Q |
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| T |
3115084 |
caccaccaacaccattgctataaagggctaccttatcaacaggtgtatactgaattgacaagctcaaaattgcttcagtcttaaagggttttcca |
3115178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 36842200 - 36842267
Alignment:
| Q |
137 |
acatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaacgcc |
204 |
Q |
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| T |
36842200 |
acatgtgcatcttgataaagagtgacattccctcctcttctaagaggaaaatatgtaccaggaacgcc |
36842267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 28531467 - 28531399
Alignment:
| Q |
133 |
tggaacatgagcatcttgataaagtgtaacttttccaccttttctaagtggaaaatatgtagcaggaac |
201 |
Q |
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||||||||||||||||||||| || ||||| ||||| ||||| || | |||||||| || |||||||| |
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| T |
28531467 |
tggaacatgagcatcttgatatagagtaacatttccccctttcctcaaaggaaaataagtggcaggaac |
28531399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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