View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_low_42 (Length: 304)
Name: NF6063_low_42
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_42 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 22712113 - 22711980
Alignment:
| Q |
21 |
aacttgtgctaaatcatttgccacttgattctcaattcttggcacatgttgaatatcaatagattcaaaattatttaacaaagaattaacagaaacaaaa |
120 |
Q |
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||||| ||||||||||||||||| |||||||| ||||||||| | |||||||||||| |||||||||||||||| ||||||||||||| ||||||| ||| |
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| T |
22712113 |
aacttatgctaaatcatttgccagttgattctaaattcttggaaaatgttgaatatcgatagattcaaaattatataacaaagaattagcagaaacgaaa |
22712014 |
T |
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| Q |
121 |
taagaaaataaattctcacttatccatttgtatt |
154 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
22712013 |
taagaaaataaattctcacttatgcatttgtatt |
22711980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 13015930 - 13016061
Alignment:
| Q |
21 |
aacttgtgctaaatcatttgccacttgattctcaattcttggcacatgttgaatatcaatagattcaaaattatttaacaaagaattaacagaaacaaaa |
120 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||||| | |||||| ||||||||||||||||||||||||||| | ||||||||||| |
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| T |
13015930 |
aacttgtgctaaatcatttgccacttgattctcgattctttgcacatgctaaatatcgatagattcaaaattatttaacaaagaaacagcagaaacaaaa |
13016029 |
T |
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| Q |
121 |
taagaaaataaattctcacttatccatttgta |
152 |
Q |
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| T |
13016030 |
taagaaaacaaattctcatttattcatttgta |
13016061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 13272083 - 13272213
Alignment:
| Q |
22 |
acttgtgctaaatcatttgccacttgattctcaattcttggcacatgttgaatatcaatagattcaaaattatttaacaaagaattaacagaaacaaaat |
121 |
Q |
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| T |
13272083 |
acttgtgctaaatcatttgcaacttgattcacaattcttggcacatattgcatatcgaaaaattcaaaattatttaacaaagaattagcagatac--aat |
13272180 |
T |
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| Q |
122 |
aagaaaataaattctcacttatccatttgtatt |
154 |
Q |
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| T |
13272181 |
aagaaaataaattctcacttatgcatttgtatt |
13272213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 23009846 - 23009978
Alignment:
| Q |
22 |
acttgtgctaaatcatttgccacttgattctcaattcttggcacatgttgaatatcaatagattcaaaattatttaacaaagaattaacagaaacaaaat |
121 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||| |||| |||||||||||| |
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| T |
23009846 |
acttgtgccaaatcatttgccacttgattctcaatttgtggcacatgttgaatattgacagattcaaaattatttaacaaagcattagcagaaacaaaat |
23009945 |
T |
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| Q |
122 |
aagaaaataaattctcacttatccatttgtatt |
154 |
Q |
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| T |
23009946 |
aaaaaatcaaattctcacttatgcacttgtatt |
23009978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 24666979 - 24667101
Alignment:
| Q |
21 |
aacttgtgctaaatcatttgccacttgattctcaattcttggcacatgttgaatatcaatagattcaaaattatttaacaaagaattaacagaaacaaaa |
120 |
Q |
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||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| | | ||| |||||||||||||||||||||| ||||||||||| |
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| T |
24666979 |
aacttgtcctaaatcatttaccacttgattctcaattctatgcacatgttgaatatttacatattgaaaattatttaacaaagaattagcagaaacaaaa |
24667078 |
T |
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| Q |
121 |
taagaaaataaattctcacttat |
143 |
Q |
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|||||||| |||||||||||||| |
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| T |
24667079 |
taagaaaacaaattctcacttat |
24667101 |
T |
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Target: scaffold0039 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 48675 - 48547
Alignment:
| Q |
24 |
ttgtgctaaatcatttgccacttgattctcaattcttggcacatgttgaatatcaatagattcaaaattatttaacaaagaattaacagaaacaaaataa |
123 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||| | ||| |||||||||||| | |||||| || |||| |||||||| |
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| T |
48675 |
ttgtgctagatcatttgccacttgattctcaattcttgacacatgttgaatattgacagactcaaaattattttaaaaagaactagtagaatcaaaataa |
48576 |
T |
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| Q |
124 |
gaaaataaattctcacttatccatttgta |
152 |
Q |
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||||| |||||||||||||| |||||||| |
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| T |
48575 |
gaaaacaaattctcacttatgcatttgta |
48547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 20081542 - 20081454
Alignment:
| Q |
20 |
taacttgtgctaaatcatttgccacttgattctcaattctt--ggcacatgttgaatatcaatagattcaaaattatttaacaaagaatt |
107 |
Q |
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|||||||||| |||||||||||||||||||| | |||| || |||||||||||||||| || |||||||| ||| || ||||||||||| |
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| T |
20081542 |
taacttgtgccaaatcatttgccacttgatttttaatttttgaggcacatgttgaatattaacagattcaacatt-ttcaacaaagaatt |
20081454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 32836694 - 32836758
Alignment:
| Q |
234 |
gaaatcatagtaaagtattttgtggttattat--ggaagtatagcaatatcaagtgccctttgct |
296 |
Q |
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| T |
32836694 |
gaaatcataggaaagttttttgtggttattgtggggaagtatagcaatatgaaatgtcctttgct |
32836758 |
T |
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