View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6063_low_44 (Length: 286)
Name: NF6063_low_44
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_44 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 32104765 - 32104586
Alignment:
| Q |
18 |
ggttcttcgtgttgacaaagaaaagggttacattgatcttagtaaacgtagggtttctgaagaagatattcaagcttgtgaagaaaggtataataagagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32104765 |
ggttcttcgtgttgacaaagaaaagggttacattgatcttagtaaacgtagggtttctgaagaagatattcaagcttgtgaagaaaggtataataagagt |
32104666 |
T |
|
| Q |
118 |
aaacttgtgcattctattatgcgccatgttgctgaaaccttggaccttgatttagaggtaaccctaattaaaataaccct |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32104665 |
aaacttgtgcattctattatgcgccatgttgctgaaaccttggaccttgatttagaggtaaccctaattaaaataaccct |
32104586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 32118534 - 32118362
Alignment:
| Q |
18 |
ggttcttcgtgttgacaaagaaaagggttacattgatcttagtaaacgtagggtttctgaagaagatattcaagcttgtgaagaaaggtataataagagt |
117 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32118534 |
ggttcttcgtgttgataaggaaaagggttacattgatcttagtaaacgtagagtttctgaagaagatattcaagcttgtgaagaaaggtataataagagt |
32118435 |
T |
|
| Q |
118 |
aaacttgtgcattctattatgcgccatgttgctgaaaccttggaccttgatttagaggtaaccctaattaaaa |
190 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||| ||||||||||| |
|
|
| T |
32118434 |
aagcttgtgcattctattatgcgccatgttgctgaaacattgaacctcgatttagaggtaatcctaattaaaa |
32118362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 32110533 - 32110363
Alignment:
| Q |
18 |
ggttcttcgtgttgacaaagaaaagggttacattgatcttagtaaacgtagggtttctgaagaagatattcaagcttgtgaagaaaggtataataagagt |
117 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
32110533 |
ggttcttcgtgttgataaggaaaagggttacatcgatcttagtaaacgtagggtttctgaggaagatattcaaacttgtgaagaacggtataataagagt |
32110434 |
T |
|
| Q |
118 |
aaacttgtgcattctattatgcgccatgttgctgaaaccttggaccttgatttagaggtaaccctaattaa |
188 |
Q |
| |
|
|| ||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32110433 |
aagcttgttcactctattatgcgtcatgttgctgaaaccttggacctcgatttagaggtaaccctaattaa |
32110363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University