View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6063_low_47 (Length: 281)

Name: NF6063_low_47
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6063_low_47
NF6063_low_47
[»] chr5 (3 HSPs)
chr5 (1-277)||(41722653-41722929)
chr5 (42-277)||(34359432-34359667)
chr5 (1-50)||(41718154-41718203)
[»] chr4 (4 HSPs)
chr4 (43-277)||(48697661-48697895)
chr4 (43-277)||(30946023-30946257)
chr4 (33-277)||(42270146-42270390)
chr4 (136-269)||(2003134-2003267)
[»] chr8 (3 HSPs)
chr8 (33-277)||(9439921-9440165)
chr8 (136-277)||(24594424-24594565)
chr8 (40-77)||(24594367-24594404)
[»] chr3 (4 HSPs)
chr3 (33-277)||(54545388-54545632)
chr3 (30-277)||(5819102-5819349)
chr3 (136-277)||(42589191-42589332)
chr3 (40-77)||(42589352-42589389)
[»] chr6 (8 HSPs)
chr6 (30-277)||(26976720-26976967)
chr6 (33-277)||(27874539-27874783)
chr6 (45-277)||(18967311-18967543)
chr6 (42-158)||(21966493-21966604)
chr6 (136-269)||(1472398-1472531)
chr6 (42-102)||(30968569-30968629)
chr6 (176-273)||(21965628-21965725)
chr6 (40-77)||(1472341-1472378)
[»] chr2 (3 HSPs)
chr2 (41-277)||(829722-829958)
chr2 (41-277)||(28715316-28715550)
chr2 (40-269)||(13840763-13840995)
[»] scaffold0074 (1 HSPs)
scaffold0074 (45-277)||(27877-28109)
[»] chr7 (5 HSPs)
chr7 (45-264)||(2323956-2324175)
chr7 (136-269)||(7504696-7504829)
chr7 (38-239)||(22510198-22510398)
chr7 (137-266)||(37957033-37957162)
chr7 (40-77)||(7504639-7504676)
[»] chr1 (2 HSPs)
chr1 (175-275)||(34973726-34973826)
chr1 (43-144)||(41413422-41413523)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-153
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 41722929 - 41722653
Alignment:
Q  1 catatcaacaaaaggtgactttatggcttatgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722929 catatcaacaaaaggtgactttatggcttatgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttg 41722830  T
Q  101 ccaactccagttgctacgtttccaataggccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41722829 ccaactccagttgctacgtttccaataggccatacgaggatcgacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatc 41722730  T
Q  201 attggtgtgaatcttctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgt 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41722729 attggtgtgaatcttctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgt 41722653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 42 - 277
Target Start/End: Complemental strand, 34359667 - 34359432
Alignment:
Q  42 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggat 141  Q
    |||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34359667 atgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtatctctaccttgccaactccagttgctacgtttccaataggccatacgaggat 34359568  T
Q  142 cgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctcta 241  Q
    |||||||||| |||||| |||| |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |    
T  34359567 cgacaccatataaacttgtcagcgttgatcggctttgtcattacatccgctaggttatcattggtgtgaatcttttgcatatccacgcttccctcctcca 34359468  T
Q  242 ctacttcgcgaacaaaatgatattgaacgcctatgt 277  Q
    ||||||| ||||||||||||||||||||||| ||||    
T  34359467 ctacttctcgaacaaaatgatattgaacgccaatgt 34359432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 41718203 - 41718154
Alignment:
Q  1 catatcaacaaaaggtgactttatggcttatgtgttcacacatgttcaca 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718203 catatcaacaaaaggtgactttatggcttatgtgttcacacatgttcaca 41718154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 43 - 277
Target Start/End: Original strand, 48697661 - 48697895
Alignment:
Q  43 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 142  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  48697661 tgttcacaatctcccacttaaagtcacttttgtgagctctcaaaatctctctaccttgccgacttcggttgctacgtttccaataggccatacgaggatc 48697760  T
Q  143 gacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctac 242  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697761 gacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctac 48697860  T
Q  243 tacttcgcgaacaaaatgatattgaacgcctatgt 277  Q
    |||||||||||||||||||||||||||||||||||    
T  48697861 tacttcgcgaacaaaatgatattgaacgcctatgt 48697895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 43 - 277
Target Start/End: Original strand, 30946023 - 30946257
Alignment:
Q  43 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 142  Q
    |||||||| |||||||||||||||||||||||||||||  ||||||||||||||||| || ||| | |||||||||||||||||||||||||||||||||    
T  30946023 tgttcacagtctcccacttaaagtcacttttgtgagctctcaaaatctctctaccttaccgacttcggttgctacgtttccaataggccatacgaggatc 30946122  T
Q  143 gacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctac 242  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30946123 gacaccatacaaacttatcagcgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctac 30946222  T
Q  243 tacttcgcgaacaaaatgatattgaacgcctatgt 277  Q
    |||||||||||||||||||||||||||||||||||    
T  30946223 tacttcgcgaacaaaatgatattgaacgcctatgt 30946257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 33 - 277
Target Start/End: Complemental strand, 42270390 - 42270146
Alignment:
Q  33 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  42270390 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactctagttgctacgtttccaataggcca 42270291  T
Q  133 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 232  Q
    ||| | ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  42270290 tacaaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 42270191  T
Q  233 cctcctctactacttcgcgaacaaaatgatattgaacgcctatgt 277  Q
    | |||||||||||||||||||||||||||||||||||||||||||    
T  42270190 cttcctctactacttcgcgaacaaaatgatattgaacgcctatgt 42270146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 269
Target Start/End: Complemental strand, 2003267 - 2003134
Alignment:
Q  136 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 235  Q
    |||||||||||||||  ||| || |||   ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || ||||| || |    
T  2003267 gaggatcgacaccatgtaaatttgtcaacattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacactccctt 2003168  T
Q  236 cctctactacttcgcgaacaaaatgatattgaac 269  Q
     |||||| ||||| ||||||||||| ||||||||    
T  2003167 tctctaccacttctcgaacaaaatggtattgaac 2003134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 33 - 277
Target Start/End: Original strand, 9439921 - 9440165
Alignment:
Q  33 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  9439921 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactccagttgctacgtttccaataggcca 9440020  T
Q  133 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 232  Q
    ||||| ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  9440021 tacgaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 9440120  T
Q  233 cctcctctactacttcgcgaacaaaatgatattgaacgcctatgt 277  Q
    | |||||||||||||||||||||||||||||||||| ||||||||    
T  9440121 cttcctctactacttcgcgaacaaaatgatattgaatgcctatgt 9440165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 277
Target Start/End: Original strand, 24594424 - 24594565
Alignment:
Q  136 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 235  Q
    ||||||| |||||||  ||| || ||||  ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || ||||| || |    
T  24594424 gaggatctacaccatgtaaatttgtcagcattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacactccctt 24594523  T
Q  236 cctctactacttcgcgaacaaaatgatattgaacgcctatgt 277  Q
     |||||| ||||| ||||||||||| |||||||| |||||||    
T  24594524 tctctaccacttctcgaacaaaatggtattgaacacctatgt 24594565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 24594367 - 24594404
Alignment:
Q  40 acatgttcacaatctcccacttaaagtcacttttgtga 77  Q
    |||| |||||||||||||||||||||||||||||||||    
T  24594367 acatcttcacaatctcccacttaaagtcacttttgtga 24594404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 33 - 277
Target Start/End: Complemental strand, 54545632 - 54545388
Alignment:
Q  33 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||  |||||||||||||||||| ||||||||| |||||||||||||||    
T  54545632 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcattcaaagcctctctaccttgccaacttcagttgctatgtttccaataggcca 54545533  T
Q  133 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 232  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  54545532 tacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 54545433  T
Q  233 cctcctctactacttcgcgaacaaaatgatattgaacgcctatgt 277  Q
    | |||||||||||||| |||| |||||||||||||||||||||||    
T  54545432 cttcctctactacttctcgaataaaatgatattgaacgcctatgt 54545388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 30 - 277
Target Start/End: Original strand, 5819102 - 5819349
Alignment:
Q  30 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaatagg 129  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| | ||||||| ||||||||| ||||||||||||||||||||||    
T  5819102 atgtgttcacacatgttcacaatctcccacttaaagttacttttgtgagcattcaaagtttctctactttgccaacttcagttgctacgtttccaatagg 5819201  T
Q  130 ccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacac 229  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||| ||||| |    
T  5819202 ccatacgaggatcgacgccatataaacttgtcagtgttgatcggctttgtcattacaactgctaggttatcattagtgtgaatcttttgcatatccacgc 5819301  T
Q  230 ttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgt 277  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||    
T  5819302 ttccctcctccactacttctcgaacaaaatgatattgaacgcctatgt 5819349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 277
Target Start/End: Complemental strand, 42589332 - 42589191
Alignment:
Q  136 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 235  Q
    ||||||| |||||||  ||| || ||||  ||||| | ||||||||| | |||||||| ||| || ||||||||||| |||||||| || ||||| || |    
T  42589332 gaggatctacaccatgtaaatttgtcagcattgattgactttgtcataatatctgctaaattgtctttggtgtgaattttctgcatatcaacactccctt 42589233  T
Q  236 cctctactacttcgcgaacaaaatgatattgaacgcctatgt 277  Q
     |||||| ||||| ||||||||||| |||||||| |||||||    
T  42589232 tctctaccacttctcgaacaaaatggtattgaacacctatgt 42589191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 42589389 - 42589352
Alignment:
Q  40 acatgttcacaatctcccacttaaagtcacttttgtga 77  Q
    |||| |||||||||||||||||||||||||||||||||    
T  42589389 acatcttcacaatctcccacttaaagtcacttttgtga 42589352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 30 - 277
Target Start/End: Original strand, 26976720 - 26976967
Alignment:
Q  30 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaatagg 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||| ||||||||| ||||||||||||||||||||||    
T  26976720 atgtgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcattcaaagtttctctactttgccaacttcagttgctacgtttccaatagg 26976819  T
Q  130 ccatacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacac 229  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |    
T  26976820 ccatacgaggatcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttttgcatatccacgc 26976919  T
Q  230 ttccctcctctactacttcgcgaacaaaatgatattgaacgcctatgt 277  Q
    |||||||||| |||||||| |||||||||||||||||||| |||||||    
T  26976920 ttccctcctccactacttctcgaacaaaatgatattgaacacctatgt 26976967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 33 - 277
Target Start/End: Original strand, 27874539 - 27874783
Alignment:
Q  33 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggcca 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  27874539 tgttcacacatgttcacaatctcccacttaaagtcacttttgtgagtattcaaagtctctctaccttgccaactctagttgctacgtttccaataggcca 27874638  T
Q  133 tacgaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttc 232  Q
    ||| | ||||||||||||| |||||| ||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  27874639 tacaaagatcgacaccatataaacttgtcagtgttgatcgactttgtcattgcatctgctaggttatcattagtgtgaatcttctgcatatccacgcttc 27874738  T
Q  233 cctcctctactacttcgcgaacaaaatgatattgaacgcctatgt 277  Q
    | |||||||||||||||||||||||||||||||||| ||||||||    
T  27874739 cttcctctactacttcgcgaacaaaatgatattgaatgcctatgt 27874783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 45 - 277
Target Start/End: Complemental strand, 18967543 - 18967311
Alignment:
Q  45 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga 144  Q
    |||||||||||||||||||||  ||||||| |||||||||||||||||||||||| || | ||  ||||||| |||| |||||||||||| |||||||||    
T  18967543 ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctctaccttacccattcatgttgctatgttttcaataggccataggaggatcga 18967444  T
Q  145 caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctacta 244  Q
    ||||||| |||||| ||||  ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18967443 caccatataaacttgtcagcattgattggttttgtcatcacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctccacta 18967344  T
Q  245 cttcgcgaacaaaatgatattgaacgcctatgt 277  Q
    |||  |||||||||||||||| |||||||||||    
T  18967343 cttgtcgaacaaaatgatatttaacgcctatgt 18967311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 158
Target Start/End: Complemental strand, 21966604 - 21966493
Alignment:
Q  42 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactcc-agttgctacgtttccaataggccatacgagga 140  Q
    ||||||||||| ||||||||| || ||||||||| || || ||||||||||||||||||||||||||   |||||||||||| |      ||||||||||    
T  21966604 atgttcacaatatcccacttacagccacttttgtaagatttcaaaatctctctaccttgccaactccttattgctacgtttcaa------catacgagga 21966511  T
Q  141 tcgacaccatacaaactt 158  Q
    ||||||||||||||||||    
T  21966510 tcgacaccatacaaactt 21966493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 269
Target Start/End: Original strand, 1472398 - 1472531
Alignment:
Q  136 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 235  Q
    |||||||||||||||  ||| || ||||  ||||| | ||||||||| |||||||||| ||| || ||||||||||| |||||||| || ||||| |  |    
T  1472398 gaggatcgacaccatgtaaatttgtcagcattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttctgcatatcaacactccttt 1472497  T
Q  236 cctctactacttcgcgaacaaaatgatattgaac 269  Q
     |||||||||||| ||||||||||| ||||||||    
T  1472498 tctctactacttctcgaacaaaatggtattgaac 1472531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 30968629 - 30968569
Alignment:
Q  42 atgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgcc 102  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  30968629 atgttcacaatctcccacttaaagtcacttttgtgagcactcaaaatctctctaccttgcc 30968569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 176 - 273
Target Start/End: Complemental strand, 21965725 - 21965628
Alignment:
Q  176 ttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgcct 273  Q
    |||||||||||||| |||| |||||||||||||||   |||||||| ||||| ||||  ||||  |||||||| | |||||||| |||||||||||||    
T  21965725 ttgtcattacatcttctaggttatcattggtgtgagcattctgcatatccacccttcattccttcactacttctcaaacaaaataatattgaacgcct 21965628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 1472341 - 1472378
Alignment:
Q  40 acatgttcacaatctcccacttaaagtcacttttgtga 77  Q
    |||| |||||||||||||||||||||||||||||||||    
T  1472341 acatcttcacaatctcccacttaaagtcacttttgtga 1472378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 41 - 277
Target Start/End: Complemental strand, 829958 - 829722
Alignment:
Q  41 catgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgagga 140  Q
    |||||||||||| ||||||||||||  |||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  829958 catgttcacaatatcccacttaaagctacttttgtgagcattcaaagtctctctaccttgccaactccagttgctatgtttccaataggccatacgagga 829859  T
Q  141 tcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctct 240  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| ||||| ||||| ||||||    
T  829858 tcgacaccatataaacttgtcagtgttgatcggctttgtcattacatctgctaggttatcattagtgtgaatcttctacatatccacgcttccttcctct 829759  T
Q  241 actacttcgcgaacaaaatgatattgaacgcctatgt 277  Q
    |||||||| ||||||||||||||||||||||||||||    
T  829758 actacttctcgaacaaaatgatattgaacgcctatgt 829722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 41 - 277
Target Start/End: Complemental strand, 28715550 - 28715316
Alignment:
Q  41 catgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgagga 140  Q
    |||||||||||||||||||||||||  || ||| | ||  | |||||||||||||||| ||||||| | |||||||| ||| |||||||||||| |||||    
T  28715550 catgttcacaatctcccacttaaagctacattttttagaattcaaaatctctctacctcgccaacttccgttgctacattttcaataggccatatgagga 28715451  T
Q  141 tcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctct 240  Q
    ||||||| ||| |||||| ||||  ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||| |||||||||     
T  28715450 tcgacactatagaaacttgtcagcattgatcgactttgtcattacatctgctaggttatcattggtgtgaatcttatgcatattcacac-tccctcctcc 28715352  T
Q  241 actacttcgcgaacaaaatgatattgaacgcctatgt 277  Q
    || ||| | |||||||||||||||||||| |||||||    
T  28715351 ac-actactcgaacaaaatgatattgaacacctatgt 28715316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 40 - 269
Target Start/End: Original strand, 13840763 - 13840995
Alignment:
Q  40 acatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacg--- 136  Q
    ||||||| |||||||| ||||||||   ||||||||||||||| ||||| ||||| ||||||||||||  ||||||| |||||||||||| |||||        
T  13840763 acatgtttacaatctctcacttaaatctacttttgtgagcttctaaaatttctctgccttgccaactcttgttgctatgtttccaataggtcatacttcc 13840862  T
Q  137 -aggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 235  Q
     ||||||||| |||||||||||||| ||  |||||||| |||||||  ||||| | ||| |||||| | || |||||||||||||  |||| |||||| |    
T  13840863 caggatcgacgccatacaaacttattagcattgatcggttttgtcaccacatccgttaggttatcacttgtctgaatcttctgcacatccatacttcctt 13840962  T
Q  236 cctctactacttcgcgaacaaaatgatattgaac 269  Q
    | || |||||||   |||||||||||||||||||    
T  13840963 cgtcgactactt-ttgaacaaaatgatattgaac 13840995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 45 - 277
Target Start/End: Original strand, 27877 - 28109
Alignment:
Q  45 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga 144  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||||| ||||||||| | ||  ||||||||||||||||||||||||| |||||||||    
T  27877 ttcacaatctcccacttaaagctacttttgcgagcttccaaaatctctttaccttgcccattcatgttgctacgtttccaataggccataggaggatcga 27976  T
Q  145 caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctacta 244  Q
    ||||||| |||||| ||||  ||||| || ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27977 caccatataaacttgtcagcattgattggttttgtaatcacatctactagattatcattggtgtgaatcttctgcatgtccacacttccctcctccacta 28076  T
Q  245 cttcgcgaacaaaatgatattgaacgcctatgt 277  Q
    |||| ||||||||||||||||||||||||||||    
T  28077 cttctcgaacaaaatgatattgaacgcctatgt 28109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 45 - 264
Target Start/End: Original strand, 2323956 - 2324175
Alignment:
Q  45 ttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatcga 144  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||| |||||||| ||||||    
T  2323956 ttcacaatctcccacttaaagccacttttgtgagcttccaaaatctctctaccttgcccattcatgttgctacgtttccaatagtccatacgatgatcga 2324055  T
Q  145 caccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctacta 244  Q
    ||||||| ||||||   ||  ||||| ||||||||||| |||||||||||  ||||||||||||| ||||||||||| |||||||||||||||| |||||    
T  2324056 caccatataaacttggtagcattgattggctttgtcatcacatctgctagggtatcattggtgtggatcttctgcatatccacacttccctcctttacta 2324155  T
Q  245 cttcgcgaacaaaatgatat 264  Q
    |||| |||||||||||||||    
T  2324156 cttctcgaacaaaatgatat 2324175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 269
Target Start/End: Original strand, 7504696 - 7504829
Alignment:
Q  136 gaggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccct 235  Q
    |||||||||||||||  ||| || ||||| ||||| | ||||||||| |||||||||| ||| || ||||||||||| || ||||| || ||||| || |    
T  7504696 gaggatcgacaccatgtaaatttgtcagtattgattgactttgtcataacatctgctaaattgtctttggtgtgaattttttgcatatcaacactccctt 7504795  T
Q  236 cctctactacttcgcgaacaaaatgatattgaac 269  Q
     |||||| ||||| ||||||||||| ||||||||    
T  7504796 tctctaccacttctcgaacaaaatggtattgaac 7504829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 239
Target Start/End: Complemental strand, 22510398 - 22510198
Alignment:
Q  38 acacatgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacga 137  Q
    |||||||||||| |||||  | ||||||  | ||||| |||||| |||||| ||||||||||||||||||| ||| ||| ||||  ||||||||| |       
T  22510398 acacatgttcactatctc--aattaaagctatttttgggagctttcaaaatatctctaccttgccaactcctgtttctatgttttgaataggccacagag 22510301  T
Q  138 ggatcgacaccatacaaacttatcagtgttga-tcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctc 236  Q
    |||| ||||||||| |||||||||| | |||| | | |||| |||| ||||||||| | |||||||  || ||||||||| |||| ||||||  ||||||    
T  22510300 ggattgacaccatataaacttatcaatattgattagactttttcatcacatctgcttggttatcatcagtttgaatcttcggcatatccacatgtccctc 22510201  T
Q  237 ctc 239  Q
    |||    
T  22510200 ctc 22510198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 266
Target Start/End: Complemental strand, 37957162 - 37957033
Alignment:
Q  137 aggatcgacaccatacaaacttatcagtgttgatcggctttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctc 236  Q
    |||||||||| |||| ||||||||||   || || | ||||||||| |||  |||||||  ||| ||  |||||||||  ||||||||||||||||| ||    
T  37957162 aggatcgacatcatataaacttatcaccattaattgactttgtcatcacacttgctagacaatctttattgtgaatctattgcatgtccacacttccttc 37957063  T
Q  237 ctctactacttcgcgaacaaaatgatattg 266  Q
    |||||||||||||| |||| ||||||||||    
T  37957062 ctctactacttcgcaaacataatgatattg 37957033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Original strand, 7504639 - 7504676
Alignment:
Q  40 acatgttcacaatctcccacttaaagtcacttttgtga 77  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  7504639 acatcttcacaatctcccacttaaagttacttttgtga 7504676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 34973826 - 34973726
Alignment:
Q  175 tttgtcattacatctgctagattatcattggtgtgaatcttctgcatgtccacacttccctcctctactacttcgcgaacaaaatgatattgaacgccta 274  Q
    |||||| | ||||||  ||| |||||||| |||||||||||| |||| |||||||||| ||| || |||||||| | || ||||||||||| || |||||    
T  34973826 tttgtcgtcacatcttttaggttatcattagtgtgaatcttcagcatatccacacttctctcttccactacttctcaaataaaatgatattaaatgccta 34973727  T
Q  275 t 275  Q
    |    
T  34973726 t 34973726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 41413422 - 41413523
Alignment:
Q  43 tgttcacaatctcccacttaaagtcacttttgtgagcttccaaaatctctctaccttgccaactccagttgctacgtttccaataggccatacgaggatc 142  Q
    |||||||||||| ||| |||||   ||||||| |||||| |||||| ||||| ||||||| | ||  ||||||| ||||| ||||| ||| ||||| |||    
T  41413422 tgttcacaatcttccatttaaaactacttttgcgagctttcaaaatatctctgccttgcccattcttgttgctatgtttctaatagaccaaacgagaatc 41413521  T
Q  143 ga 144  Q
    ||    
T  41413522 ga 41413523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University