View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_low_50 (Length: 275)
Name: NF6063_low_50
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 32835378 - 32835131
Alignment:
| Q |
13 |
aatatatgtataataatcacaagcatcatagtcatagatattaatcaaattaaattgttcactaatgtcacatgcctagtaatatatgtatgtat----a |
108 |
Q |
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| T |
32835378 |
aatatatgtataataatcacaagcatcatagtcatagatgttaatcaaattaaattgttcactaatgtcacatgcctagtaatatatgtatgtatgtata |
32835279 |
T |
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| Q |
109 |
accacaagcatcattgtcaaaacgacaaacacacgcagaaatagggacaactatatttatgccaccttgtttatttttactcaattattaatgaaatgta |
208 |
Q |
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| T |
32835278 |
accacaagcatcattgtcaaaacgacaaacacacgcagaaatagggacaactatatttatgccaccttgtttgtttttactcaattattaatgaaatgta |
32835179 |
T |
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| Q |
209 |
cgagtatctgttgattgaagttaattttttaatgctatttttatttata |
257 |
Q |
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| T |
32835178 |
cgagtatctgttgattgaagttaat-ttttaatgctatttttatttata |
32835131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 32835416 - 32835345
Alignment:
| Q |
55 |
aatcaaattaaattgttcactaatgtcacatgcctagtaatatatgtatgtataaccacaagcatcattgtca |
127 |
Q |
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| T |
32835416 |
aatcaaattaaattgttcactaatgtcacttgcctaataatatatgtat-aataatcacaagcatcatagtca |
32835345 |
T |
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