View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_low_55 (Length: 252)
Name: NF6063_low_55
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_55 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 5112110 - 5112272
Alignment:
| Q |
1 |
attccaaatgtttggcgtgattgcaaagagttggaagatttggaactatccgggaataattttgacaaaggacgtattccggctgatattggaaaattga |
100 |
Q |
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| T |
5112110 |
attccaaatgtttggcgtgattgcaaagagttggaagatttgcaactatccgggaataattttgacaaaggacgtattccggctgatattggaaaattga |
5112209 |
T |
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| Q |
101 |
tcaaacttcaatttttgtatctcgcagaaaacaacttggagggtaagatatttgtgtcaatat |
163 |
Q |
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| T |
5112210 |
tcaaacttcaagttttgtatctcgcagaaaacaacttcgagggtaagatatttgtgtcaatat |
5112272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 163
Target Start/End: Original strand, 5095355 - 5095514
Alignment:
| Q |
4 |
ccaaatgtttggcgtgattgcaaagagttggaagatttggaactatccgggaataattttgacaaaggacgtattccggctgatattggaaaattgatca |
103 |
Q |
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| T |
5095355 |
ccaaatgtttggcatgattgcaaagagttggaagatttagaattgtccttaaataattttgacaaaggacgtattccggctgacattggaaaattggcca |
5095454 |
T |
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| Q |
104 |
aacttcaatttttgtatctcgcagaaaacaacttggagggtaagatatttgtgtcaatat |
163 |
Q |
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| T |
5095455 |
aacttcaatttctgtatcttgcagataacaacttggagggtaagatatttttgccaatat |
5095514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 5112346 - 5112415
Alignment:
| Q |
181 |
aaatattaagtttttgcttattgttttcttaaagttaaaaatgttgccattgattttgatttttcctatg |
250 |
Q |
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| T |
5112346 |
aaatattaagtttttatttattgtttccttaaagttaaaaatgttgccattgattttgatttttcctatg |
5112415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 5082986 - 5082839
Alignment:
| Q |
4 |
ccaaatgtttggcgtgattgcaaagagttggaagatttggaactatccgggaataattttgacaaaggacgtattccggctgatattggaaaattgatca |
103 |
Q |
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| T |
5082986 |
ccaaatgtttggcattattgcaaagagttggaagaattgatactatctttcaataattttgacaaaggacatatgccagctgacattgcaaacttgccaa |
5082887 |
T |
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| Q |
104 |
aacttcaatttttgtatctcgcagaaaacaacttggagggtaagatat |
151 |
Q |
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| T |
5082886 |
agcttcaatctttgtatcttattagcaacaacttggagggtaagatat |
5082839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 14427377 - 14427228
Alignment:
| Q |
4 |
ccaaatgtttggcgtgattgcaaagagttggaagatttggaactatccgggaataattttgacaaaggacgtattccggctgatattggaaaattgatca |
103 |
Q |
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| T |
14427377 |
ccaaatgtttggcgtgattgcaaagagttggaagaattggaattatccaaaaataattttgacaaaggacgtatacctgctgacattggaaaattgacca |
14427278 |
T |
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| Q |
104 |
aacttcaatttttgtatctcgcagaaaacaacttggagggtaagatattt |
153 |
Q |
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| T |
14427277 |
aacttcagtctctgtatctcgcaaaaaacaacttggagggtaagatattt |
14427228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 16874794 - 16874943
Alignment:
| Q |
1 |
attccaaatgtttggcgtgattgcaaagagttggaagatttggaactatccgggaataattttgacaaaggacgtattccggctgatattggaaaattga |
100 |
Q |
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||||||||| |||||||| |||||||||||||||||||||| || |||||| ||||||||||| |||||||||||||| |||| |||||||| |||| |
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| T |
16874794 |
attccaaatatttggcgttattgcaaagagttggaagatttagagctatccttcaataattttgataaaggacgtattccatctgagattggaaacttga |
16874893 |
T |
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| Q |
101 |
tcaaacttcaatttttgtatctcgcagaaaacaacttggagggtaagata |
150 |
Q |
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| T |
16874894 |
ccaagcttcggtatttgtatcttcctagcaacaacttggagggtaagata |
16874943 |
T |
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