View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6063_low_57 (Length: 251)
Name: NF6063_low_57
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_57 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 55712031 - 55711789
Alignment:
| Q |
9 |
agcacagaataggactgtccgatatggatgtcgagtgaagaataagtgttttggagggtatgagatccttctacttccacaagtttcaatgagtgtcctt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55712031 |
agcacagaataggactgtccgatatggatgtcgagtgaagaataagtgttttggagggtatgagatccttctacttccacaagtttcaatgagtgtcctt |
55711932 |
T |
|
| Q |
109 |
ggattatgaagttgatggatgctacgagccccacatttgatattctgaatccatatgtcttacctgcactcctgcagattgaacatttaaacaattgagt |
208 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
55711931 |
ggattatgaagttgatggatgctgcgagccccacatttgatattctgaatccatatgtcttacctgcactcctgcagattgaacatttaaacaattgtgt |
55711832 |
T |
|
| Q |
209 |
aaatgtaataagtacatgagtagattcaacatttaagcaatgc |
251 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
55711831 |
aaatgtaataagtatatgagtagattcaacatttaagcaatgc |
55711789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 55296066 - 55295899
Alignment:
| Q |
9 |
agcacagaataggactgtccgatatggatgtcgagtgaagaataagtgttttggagggtatgagatccttctacttccacaagtttcaatgagtgtcctt |
108 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
55296066 |
agcacagaataggactgcccgagatggatgtcgagtgaagaataagtgttttggagggtatgagatccttctacttctacaagtttcaatgagtgtcctt |
55295967 |
T |
|
| Q |
109 |
ggattatgaagttgatggatgctacgagccccacatttgatattctgaatccatatgtcttacctgca |
176 |
Q |
| |
|
||||| ||||||||||||||| | ||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
55295966 |
ggattctgaagttgatggatgttgcgagcccaacatttgatattctgaatctatatgtcttacctgca |
55295899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University