View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_low_6 (Length: 511)
Name: NF6063_low_6
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_6 |
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| [»] scaffold0024 (4 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 131292 - 131791
Alignment:
| Q |
1 |
atgacactaattattcttttatgattatgggcatttagtagctcgactggtttgagccaacggtcaagaaggtgaaggtccatggtttgagnnnnnnnnc |
100 |
Q |
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| T |
131292 |
atgacactaattattcttttatgattatgggcatttagtagctctactggtttgagctaatggtcaaggaggtgaaggtccatggtttgagaaaaaaaaa |
131391 |
T |
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| Q |
101 |
taccaaaaaatttaatatactaacattcatcattcnnnnnnngtattctttaagaatagtttcatatgagatttgaacttcctctc-taaagtcacaaaa |
199 |
Q |
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| T |
131392 |
ttactaaaaaattaatatactaacattcattattcaaaaaaagtattctcttaaaagagttttatatgagatttgaacttcctctcgtgaagtcacaaag |
131491 |
T |
|
| Q |
200 |
tcaagttctaacaattcatcttacacctcatggattataaccatcaaaatggtgaatgaggtgcaacattgggtacttttcgtgacaaatgtatttagtt |
299 |
Q |
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| T |
131492 |
tcaaattctaacaattgatcttacacctcatggattataaccatcaaaatggtgaatgaggtgcaacattgggtactttttgtgacaaatatatttagtt |
131591 |
T |
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| Q |
300 |
gattacatatgattatggttaagtatatagggtctagaggcttcgtgcatgtaaacaaacaaacaaacaattattgtttgtgttcaagcc---nnnnnnn |
396 |
Q |
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| T |
131592 |
gattacatatgattatggttaagtatatagggtctagaggcttcgtgcatataaacaaacaaacaaacgattattgtttgcgttcaagcctttttttttt |
131691 |
T |
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| Q |
397 |
nnnaaacgattgtgttcaagactttggcaatcacacaaatcattaatcaatattattttaatttctacacaaatttattttggaaataacataacaaata |
496 |
Q |
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| T |
131692 |
tttaaacgattgtgttcaagactttggcaatcacacaaatcattaatcaatattattttaatttctacacaaatttattttggaaataacataacaaata |
131791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 449 - 496
Target Start/End: Original strand, 145843 - 145890
Alignment:
| Q |
449 |
ttattttaatttctacacaaatttattttggaaataacataacaaata |
496 |
Q |
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| T |
145843 |
ttattttaatttctacacaaatttattttggaaataacataacaaata |
145890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 407 - 487
Target Start/End: Complemental strand, 146933 - 146853
Alignment:
| Q |
407 |
tgtgttcaagactttggcaatcacacaaatcattaatcaatattattttaatttctacacaaatttattttggaaataaca |
487 |
Q |
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| T |
146933 |
tgtgtccaagactttgacaatcacgcacgtcctaaatcaatcttattttattttctacacaaatttattttggaaataaca |
146853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 329
Target Start/End: Complemental strand, 147067 - 146973
Alignment:
| Q |
234 |
ttataaccatcaaaatggtgaatgaggtgcaacattgggtacttttcgtgacaaatgtatttagttgattacatatgattatggttaagtatatag |
329 |
Q |
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| T |
147067 |
ttataaccatcaaaatggtgaatgaggtgcaacattgag-atttttcatcaaacaaataattatttgattacaaatgattttggttaagtatatag |
146973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 155 - 328
Target Start/End: Original strand, 14512157 - 14512331
Alignment:
| Q |
155 |
aatagtttcatatgagatttgaacttcctctc-taaagtcacaaaatcaagttctaacaattcatcttacacctcatggattataaccatcaaaatggtg |
253 |
Q |
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| T |
14512157 |
aatagtttcatatgagatttgaacttcttatcgtgaagtgacaaagtcaagttctaacaattgatcttacacctcatggattataactatcaaaatggtg |
14512256 |
T |
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| Q |
254 |
aatgaggtgcaacattgggtacttttcgtgacaaatgtatttagttgattacatatgattatggttaagtatata |
328 |
Q |
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| T |
14512257 |
aatgaggtgcaacattgggtacttttcgtgacaaatatatttagttgattacatatgattatggttaagtatata |
14512331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 406 - 496
Target Start/End: Original strand, 14512356 - 14512446
Alignment:
| Q |
406 |
ttgtgttcaagactttggcaatcacacaaatcattaatcaatattattttaatttctacacaaatttattttggaaataacataacaaata |
496 |
Q |
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| T |
14512356 |
ttgtgttcaagactttggcaatcccacaaatcattaattgatattattttaatttctacacaaatttattttggaaataacataacaaata |
14512446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 387
Target Start/End: Original strand, 14512330 - 14512366
Alignment:
| Q |
351 |
taaacaaacaaacaaacaattattgtttgtgttcaag |
387 |
Q |
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| T |
14512330 |
taaacaaacaaacaaacaattattgtttgtgttcaag |
14512366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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