View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_low_60 (Length: 250)
Name: NF6063_low_60
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_60 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 54619869 - 54620111
Alignment:
| Q |
8 |
gagcagagatagtggaccatcataaagtagccaattggggacagaataagagggtgttgattgagacagtgatagctaagccacagaatgatgaatacat |
107 |
Q |
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| T |
54619869 |
gagcagggatagtggaccatcataaagtagccaattggggacagaataagagggtgttgattgagacagtgatagctaagccacagaatgatgaatacat |
54619968 |
T |
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| Q |
108 |
agctctaagtatgcggtgtaaaggagtgttatgggcagacatttctttgtctccaatttattagaatcatattttgtctctgatgtacccaataatattt |
207 |
Q |
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| T |
54619969 |
agctctaagtatgcggtgtaaaggagtgttatgggcagacatttctttgtctccaatttattagaatcatattttgtctctgatgtacccaataatattt |
54620068 |
T |
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| Q |
208 |
atgattcagttcaatcaaaaatatcatttctactcatgtgtct |
250 |
Q |
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| T |
54620069 |
atgattcagttcaatcaaaaatatcatttctactcatgtgtct |
54620111 |
T |
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