View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_low_63 (Length: 246)
Name: NF6063_low_63
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 47478738 - 47478958
Alignment:
| Q |
11 |
cagagacacagaaatatagcatatatgagggaatggtgccaaatagacaagccatgacacagacaaagacaatcgaagtatcaatgccagcttctgctac |
110 |
Q |
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| T |
47478738 |
cagagacacagaaatatagcatatatgagggaatggtgacaaatagacaagccatgacacagacaaagacaatcgaagtatcaatgccagcttctgctac |
47478837 |
T |
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| Q |
111 |
agatagctcaaattaaaatttgagttccaataataatttacattgnnnnnnnaaaagagttccaataacaatttactatttgccttatattttcatgaac |
210 |
Q |
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| T |
47478838 |
agatagctcaaattaaaatttgagttccaataataatttacattgtttttttaaaagagttccaataacaatttactatttgccttatattttcatgaaa |
47478937 |
T |
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| Q |
211 |
agaaacaaaaaatgtcgtgtg |
231 |
Q |
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| T |
47478938 |
agaaacaaaaaatgtcgtgtg |
47478958 |
T |
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