View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_low_68 (Length: 239)
Name: NF6063_low_68
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_68 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 38224377 - 38224156
Alignment:
| Q |
18 |
aaacttgccttggagaaagaacagagaaaatttaaattttgtttactgaaatttttatgcagattcaaagctctttcaagatggatactcaaaggattgc |
117 |
Q |
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| T |
38224377 |
aaacttgccttagagaaagaacaaagaaaatttaaattttgtttactgaaatttttatgcagattcaaagctctttcaagatggatactcaaaggattgc |
38224278 |
T |
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| Q |
118 |
tggagtcaaatacgagtgcttgctttttggtatgatggataataatcttgcaagaatattggttaatgatgatgcatttcctcttcaaattttaatatag |
217 |
Q |
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| T |
38224277 |
tggagtcaaatacgagtgcttgctttttggtatgatggataataatcttgcaagaatattggttaatgatgatgcatttcctcttcaaattttaatatag |
38224178 |
T |
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| Q |
218 |
aaggaacttaaaagtaaatatt |
239 |
Q |
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| T |
38224177 |
aaggaacttaaaagtaaatatt |
38224156 |
T |
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