View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6063_low_69 (Length: 239)
Name: NF6063_low_69
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_69 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5111930 - 5111719
Alignment:
| Q |
1 |
tcagttgtgtatgatcaccaattccttttggaatttctcctttagttcaacacatatagatagatagatagaggaaatacattcattaattagaattact |
100 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5111930 |
tcagttctgtaagatcaccaattccttttggaatttctcctttagttcaacacatatagatagataga----ggaaatacattcattaattagaattact |
5111835 |
T |
|
| Q |
101 |
tagaatgattcatatattatattagttgccatgcaatatatgcacattcatttatacaagggtctaaagaaggcttaattagcggtccctccgtccttca |
200 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
5111834 |
tagaatgattcatatattata---gttaccatgcaat----gcacattcatttatacaagggtctaaagaaggcttaattagcggtctctcggtccttca |
5111742 |
T |
|
| Q |
201 |
tgatataaatgaaaggttcatat |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
5111741 |
tgatataaatgaaaggttcatat |
5111719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 5083178 - 5083229
Alignment:
| Q |
1 |
tcagttgtgtatgatcaccaattccttttggaatttctcctttagttcaaca |
52 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
5083178 |
tcagttgtgtaagatcaccaattcctttaggaatttcacctttagttcaaca |
5083229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 5095160 - 5095118
Alignment:
| Q |
13 |
gatcaccaattccttttggaatttctcctttagttcaacacat |
55 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||| |||| |
|
|
| T |
5095160 |
gatcaccaatttctttgggaatttctcctttagttcaatacat |
5095118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 16874600 - 16874554
Alignment:
| Q |
6 |
tgtgtatgatcaccaattccttttggaatttctcctttagttcaaca |
52 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
16874600 |
tgtgtaagatcaccaattccttttggaatttcaccttttgttcaaca |
16874554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 14427560 - 14427599
Alignment:
| Q |
1 |
tcagttgtgtatgatcaccaattccttttggaatttctcc |
40 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
14427560 |
tcagttgtgtaagatcaccaattcctttcggaatttctcc |
14427599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University