View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6063_low_71 (Length: 236)
Name: NF6063_low_71
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_71 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 90 - 221
Target Start/End: Original strand, 36646004 - 36646135
Alignment:
| Q |
90 |
ctaacggagctgttattagaaaatgatgtatgtccatgactatatttggttcctcgcgtgttagcaatccaaacatcaaatccattatctgccaaaagga |
189 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36646004 |
ctaaccgagctgttattagaaaatgatgtatgtccatgactatatttggttcctcgtgtgttagcaatccaaacatcaaatccattatctgccaaaagga |
36646103 |
T |
|
| Q |
190 |
atgcaagagattgacttggtggtagcaacaac |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
36646104 |
atgcaagagattgacttggtggtagcaacaac |
36646135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 1019847 - 1019619
Alignment:
| Q |
2 |
caatttcgaccacattgactgcttttttctacaatataaaggtttatagtgtaaccataacttaaaaccatgtaatatagtnnnnnnn-------ctaac |
94 |
Q |
| |
|
|||||| ||||||||||||||| |||||| |||||||||||||| |||||||| | ||||||||||||||||||||||| ||||| |
|
|
| T |
1019847 |
caattttgaccacattgactgcatttttccgcaatataaaggtttgtagtgtaatcgcaacttaaaaccatgtaatatagtaaaaaaaaacaaaactaac |
1019748 |
T |
|
| Q |
95 |
ggagctgttattagaaaatgatgtatgtccatgactatatttggttcctcgcgtgttagcaatccaaacatcaaatccattatctgccaaaaggaatgca |
194 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
1019747 |
cgagctgttattagaaaatgatgcatgtccatgactatatttggttcctcgtgtgttagcaatccaaacatcaaatccattatctgccaacagaaatgca |
1019648 |
T |
|
| Q |
195 |
agagattga--cttggtggtagcaacaac |
221 |
Q |
| |
|
||||||||| | ||||||||||||||| |
|
|
| T |
1019647 |
agagattgattataggtggtagcaacaac |
1019619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University