View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_low_74 (Length: 230)
Name: NF6063_low_74
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_74 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 4845605 - 4845382
Alignment:
| Q |
7 |
actaattatgtgttgaagccatgcttaaatatgattttgtttctttgaagctaaatgcatcacacagtggaagaggcacaacaaataccttatcttgaga |
106 |
Q |
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| T |
4845605 |
actaattatgtgttgaagccatccttaaatatgattttgtttctttgaagctaaatgcatcacacagtggaagaggcacaacaaataccttatcttgaga |
4845506 |
T |
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| Q |
107 |
acttttcgctccaacatatgatccatgtttcaaaaaatggtgtatagagtttagagggagacctccctgaatccgtaaccaagctggtactccatgccat |
206 |
Q |
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| T |
4845505 |
acttttcgctccaacgtatgatccatgtttcaaaaaatggtgtatagagtttagagggagagctccctgaatccgcaaccaagctgctactccatgccat |
4845406 |
T |
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| Q |
207 |
atactataataaaaagagcactaa |
230 |
Q |
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| T |
4845405 |
atactataataaaaagagcactaa |
4845382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 4800314 - 4800246
Alignment:
| Q |
7 |
actaattatgtgttgaagcca-tgcttaaatatgattttgtttctttgaagctaaatgcatcacacagt |
74 |
Q |
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||||||||||||||||||||| | |||||| |||||||||||||| |||| | ||||||| || ||||| |
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| T |
4800314 |
actaattatgtgttgaagccattccttaaagatgattttgtttctatgaatccaaatgcaccaaacagt |
4800246 |
T |
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