View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_low_75 (Length: 224)
Name: NF6063_low_75
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_75 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 10118712 - 10118916
Alignment:
| Q |
1 |
tatatatattcaaaccaagcagcacaagaactagggaaaaatgccctttatctgggagtgctatttctggcagaatgggtttgcagtaagggacattatt |
100 |
Q |
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| T |
10118712 |
tatatatattcaaaccaagcagcacaagaactagggaaaaatgccctttatctgggagtgccatttctggcagaatgggtttgcagtaagggacattatt |
10118811 |
T |
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| Q |
101 |
ggaaatcacagtttacagctgctaaaggtataatgacagacatctccattagcaacccttcccttaatgtcagtttcttcttattggaagttagttagtc |
200 |
Q |
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| T |
10118812 |
ggaaatcacagtttacagctgctaaaggtataatgacagacatctccattagcaacccttcccttaatgtcagtttcttcttattggaagttagttagtc |
10118911 |
T |
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| Q |
201 |
agaac |
205 |
Q |
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||||| |
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| T |
10118912 |
agaac |
10118916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 10125309 - 10125513
Alignment:
| Q |
1 |
tatatatattcaaaccaagcagcacaagaactagggaaaaatgccctttatctgggagtgctatttctggcagaatgggtttgcagtaagggacattatt |
100 |
Q |
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|||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||||| | ||||||||| ||||||||| | | ||| ||||||| || |
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| T |
10125309 |
tatatatactcaagacaagcagcacaagaactagggaaaaaggccctttatcttggagttccatttctggccgaatgggttcgtaataaaggacattttt |
10125408 |
T |
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| Q |
101 |
ggaaatcacagtttacagctgctaaaggtataatgacagacatctccattagcaacccttccct-taatgtcagtttcttcttattggaagttagttagt |
199 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| |||||| |||||| ||| |||||||||| | |
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| T |
10125409 |
ggaaatcacagttaacagctgctaaaggtataatgacagacatcttcattagcaagccttccctaaaatatcagttgcttcttcttgaaagttagttatt |
10125508 |
T |
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| Q |
200 |
cagaa |
204 |
Q |
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||||| |
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| T |
10125509 |
cagaa |
10125513 |
T |
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