View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6063_low_76 (Length: 220)
Name: NF6063_low_76
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6063_low_76 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 21704764 - 21704959
Alignment:
| Q |
15 |
atcaaatttaacatttgaaggaatagatggactcaaggttttttctctaaacaatgattcctatcaagatgtactattct---cattgcctccatcagtc |
111 |
Q |
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| T |
21704764 |
atcaaatttaacatttgaaggaattgatggactcaaggttttttctttaaccaatgattcctatcatgatgtactattcttctcattgcctccatcagtc |
21704863 |
T |
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| Q |
112 |
caatttttctcaaatgttcgaactctgcgcttgaatgggttgaagttaggtgacatttcttttgtagcaaagttaacaatgcttgaggttcatctc |
207 |
Q |
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| T |
21704864 |
caatttttaacaaatgttcgaactctgcgcttgaatgggttgaagttagatgacatttcttttgtagcaaagttaacaatgcttgaggttcttctc |
21704959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 21714752 - 21714565
Alignment:
| Q |
15 |
atcaaatttaacatttgaaggaatagatggactcaaggttttttctctaaacaatgattcctatcaagatgtactattctcattgcctccatcagtccaa |
114 |
Q |
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| T |
21714752 |
atcaaatttaacatttgaaggaatagaagggctcaaggtattttctctaaccaatgattccaatagtgaagtactattctcattgcctccatcaatccaa |
21714653 |
T |
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| Q |
115 |
tttttctcaaatgttcgaactctgcgcttgaatgggttgaagttaggtgacatttcttttgtagcaaagttaacaatgcttgaggttc |
202 |
Q |
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| T |
21714652 |
atgttgacaaatgttcgaactctgcgcttgaatgggttgaagttgggtaacatttcttttatagcaagcttaacaaggctcgaggttc |
21714565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 21123731 - 21123779
Alignment:
| Q |
123 |
aaatgttcgaactctgcgcttgaatgggttgaagttaggtgacatttct |
171 |
Q |
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| T |
21123731 |
aaatgttcgaactttgcgcttaaatggattgaactttggtgacatttct |
21123779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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