View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6063_low_81 (Length: 215)

Name: NF6063_low_81
Description: NF6063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6063_low_81
NF6063_low_81
[»] chr1 (12 HSPs)
chr1 (1-210)||(47713255-47713464)
chr1 (1-210)||(47745838-47746047)
chr1 (5-215)||(47718044-47718254)
chr1 (1-210)||(47760170-47760379)
chr1 (3-116)||(6517364-6517477)
chr1 (3-208)||(6521558-6521763)
chr1 (3-124)||(6512957-6513078)
chr1 (1-129)||(6507051-6507179)
chr1 (15-210)||(6523572-6523767)
chr1 (1-88)||(6500263-6500350)
chr1 (1-64)||(47777874-47777937)
chr1 (164-208)||(47778037-47778081)
[»] chr5 (3 HSPs)
chr5 (1-203)||(28856511-28856713)
chr5 (1-206)||(28861785-28861990)
chr5 (1-200)||(28831318-28831517)
[»] scaffold0341 (2 HSPs)
scaffold0341 (1-129)||(1076-1204)
scaffold0341 (1-129)||(8730-8858)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 47713464 - 47713255
Alignment:
Q  1 tcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713464 tcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattgg 47713365  T
Q  101 actctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713364 actctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaatt 47713265  T
Q  201 ggttggtatg 210  Q
    ||||||||||    
T  47713264 ggttggtatg 47713255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 47746047 - 47745838
Alignment:
Q  1 tcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||    
T  47746047 tcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttctcttatggccaaaacactgataaagtaaacgccattgg 47745948  T
Q  101 actctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaatt 200  Q
    |||||||||||||||||||||||| ||  ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  47745947 actctgcagaggagatgttaaacccgacctttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaacccaaaaagaagcaatt 47745848  T
Q  201 ggttggtatg 210  Q
     |||||||||    
T  47745847 agttggtatg 47745838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 5 - 215
Target Start/End: Complemental strand, 47718254 - 47718044
Alignment:
Q  5 cacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactc 104  Q
    ||||||||| |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| |||    
T  47718254 cacccttttgtccaatctaacttccaacacagaaatcaactacggtttctacaatttctcttatggccaaaacactgacaaagtaaacgccgttggcctc 47718155  T
Q  105 tgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggtt 204  Q
    ||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47718154 tgcagaggagatgttaaacctgacgtttgccgaagttgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcgattggtt 47718055  T
Q  205 ggtatgttgac 215  Q
    |||||||||||    
T  47718054 ggtatgttgac 47718044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 47760379 - 47760170
Alignment:
Q  1 tcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattgg 100  Q
    |||||||| |||| |||||||| ||||||||| |  ||||||||||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||    
T  47760379 tcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttctacaatatttcttatggccaaaacactgacaaagtaaacgccattgg 47760280  T
Q  101 actctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaatt 200  Q
    |||||| ||||||||||||||||| || |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47760279 actctgtagaggagatgttaaacccgacgtttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaatt 47760180  T
Q  201 ggttggtatg 210  Q
    ||||||||||    
T  47760179 ggttggtatg 47760170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 6517477 - 6517364
Alignment:
Q  3 aacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggac 102  Q
    |||||||||||||||| ||||||||||||||   ||||||||||||| ||||| || | ||||||||||  ||||| ||||||||||||||| |||||||    
T  6517477 aacacccttttatccattctcacttccaacaaagaaatcaactacggtttctataactcctcttatggcataaacagcgacaaagtaaacgcaattggac 6517378  T
Q  103 tctgcagaggagat 116  Q
    | ||||||||||||    
T  6517377 tatgcagaggagat 6517364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 6521558 - 6521763
Alignment:
Q  3 aacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggac 102  Q
    |||||||||||||||| ||||||||||||||   | ||||||||||| ||||| |||| |||||||||  | ||||| |||||||||||||| |||||||    
T  6521558 aacacccttttatccactctcacttccaacaaagatatcaactacggtttctataattcctcttatggaaacaacactgacaaagtaaacgcgattggac 6521657  T
Q  103 tctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattgg 202  Q
    | || ||||||||||| ||||   ||| ||| |  | | | |||||  ||||||  |||||||| ||| ||| ||||| ||||| |||||||||||||||    
T  6521658 tatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtcaaaaccgaaaagaagcaattgg 6521757  T
Q  203 ttggta 208  Q
     |||||    
T  6521758 atggta 6521763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 6513078 - 6512957
Alignment:
Q  3 aacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggac 102  Q
    ||||||||| |||||| ||||||||||||||   | ||||||||||| ||||| |||| |||||||||   ||||||||||||||||||||| |||||||    
T  6513078 aacacccttctatccactctcacttccaacaaagatatcaactacggtttctataattcctcttatggaataaacaccgacaaagtaaacgctattggac 6512979  T
Q  103 tctgcagaggagatgttaaacc 124  Q
    | || ||||||||||| |||||    
T  6512978 tttgtagaggagatgtcaaacc 6512957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 6507179 - 6507051
Alignment:
Q  1 tcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattgg 100  Q
    |||| |||||| |||||| ||||||||||||||   | || |||||||| ||||| |||| ||||||||||  ||||||||||||||||||||| |||||    
T  6507179 tcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattgg 6507080  T
Q  101 actctgcagaggagatgttaaacctgatg 129  Q
    ||| || ||||||||||| ||||| ||||    
T  6507079 actgtgtagaggagatgtcaaacccgatg 6507051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 6523572 - 6523767
Alignment:
Q  15 tccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggag 114  Q
    |||| ||||||||||||||| |||||||||||||| ||||||||||||||  | ||  |||||||  ||||||||||||| ||||| || |||||||| |    
T  6523572 tccactctcacttccaacacgcaaatcaactacggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcg 6523671  T
Q  115 atgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaattggttggtatg 210  Q
    |||||||  |  | |  || |  ||| | ||||||| ||||||      ||||||| | |||||||||||||||||||||||||||||||||||||    
T  6523672 atgttaagacaaacgagtgtcttagttgcctcaatggttcaagtaacaatctcacacagctttgtccaaaccaaaaagaagcaattggttggtatg 6523767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 6500350 - 6500263
Alignment:
Q  1 tcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagt 88  Q
    ||||||| |||||||| | |||||||||||||||  ||||||||||||| ||||||||||| ||  ||||| |||||| |||||||||    
T  6500350 tcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatttttcacatggcgaaaacagcgacaaagt 6500263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 47777874 - 47777937
Alignment:
Q  1 tcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctc 64  Q
    ||||||| |||||||||| ||||| ||||||||| |||||||| ||||| ||||||||||||||    
T  47777874 tcaacacacttttatccactctcatttccaacacacaaatcaattacggtttctacaatttctc 47777937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 47778037 - 47778081
Alignment:
Q  164 tctcacaaaactttgtccaaaccaaaaagaagcaattggttggta 208  Q
    ||||||| |||||||||||||| |||| |||||||||||||||||    
T  47778037 tctcacacaactttgtccaaacaaaaaggaagcaattggttggta 47778081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 28856713 - 28856511
Alignment:
Q  1 tcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattgg 100  Q
    ||||||| |||||||| | ||| |||||||||||  |||||| |||||| |||||||| ||||| |  ||| || ||| | |||||||| ||||||| ||    
T  28856713 tcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaacttctcattcggcgaagacaacaacaaagtatacgccatagg 28856614  T
Q  101 actctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaatt 200  Q
    | | ||||||||||||||||| ||  ||| |||||||||| |||| ||  |||||||||||||||| ||| ||  |||||||||| ||||||||||||||    
T  28856613 attatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaattgtccaaacaaaaaagaagcaatt 28856514  T
Q  201 ggt 203  Q
    |||    
T  28856513 ggt 28856511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 28861990 - 28861785
Alignment:
Q  1 tcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattgg 100  Q
    ||||||| |||||||| | ||| |||||||||||  |||||| |||||| |||||||| ||||| |  ||| || ||| | |||||||| ||||||| ||    
T  28861990 tcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaacttctcattcggcgaagacaacaacaaagtatacgccatagg 28861891  T
Q  101 actctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaatt 200  Q
    | | ||||||||||||||||| ||  ||| |||||||||| |||| ||  |||||||||||||||| ||| ||   ||||| ||||||||||||||||||    
T  28861890 attatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaaatgtcctaaccaaaaagaagcaatt 28861791  T
Q  201 ggttgg 206  Q
    ||||||    
T  28861790 ggttgg 28861785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 28831517 - 28831318
Alignment:
Q  1 tcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattgg 100  Q
    ||||||| |||||||| | ||| |||||||||||  |||||| |||||| |||||||| ||||| || ||| ||  || | |||||||| ||||||| ||    
T  28831517 tcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaacttctcatacggcaaaggcaacaacaaagtatacgccatagg 28831418  T
Q  101 actctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcacaaaactttgtccaaaccaaaaagaagcaatt 200  Q
    | | || |||||||||||||| ||  ||| ||||||| ||  ||| ||  |||||||||||||||| ||| ||  |||||||||||||||||||||||||    
T  28831417 attatgtagaggagatgttaatccaaatgattgccgccgttatcttaacaattcaagagttcttctaacacaaaattgtccaaaccaaaaagaagcaatt 28831318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 1204 - 1076
Alignment:
Q  1 tcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattgg 100  Q
    |||| |||||| |||||| ||||||||||||||   | || |||||||| ||||| |||| ||||||||||  ||||||||||||||||||||| |||||    
T  1204 tcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattgg 1105  T
Q  101 actctgcagaggagatgttaaacctgatg 129  Q
    ||| || ||||||||||| ||||| ||||    
T  1104 actgtgtagaggagatgtcaaacccgatg 1076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 8858 - 8730
Alignment:
Q  1 tcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattgg 100  Q
    |||| |||||| |||||| ||||||||||||||   | || |||||||| ||||| |||| ||||||||||  ||||||||||||||||||||| |||||    
T  8858 tcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattcctcttatggcgtaaacaccgacaaagtaaacgctattgg 8759  T
Q  101 actctgcagaggagatgttaaacctgatg 129  Q
    ||| || ||||||||||| ||||| ||||    
T  8758 actgtgtagaggagatgtcaaacccgatg 8730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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