View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6065_high_10 (Length: 284)
Name: NF6065_high_10
Description: NF6065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6065_high_10 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 29 - 284
Target Start/End: Original strand, 14628945 - 14629201
Alignment:
| Q |
29 |
ttgcatgaatgtttgagaatagtgaaaaattcttttgaaatttaatgattatctca--gtcaagaatttcttttcatactgttatgcatagtttattatt |
126 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14628945 |
ttgcatgaatgtttgagaatcgtgaaaaattcttttgaaatttaatgattatctcaaagtcaagaatttcttttcatactgttatgcatagtttattatt |
14629044 |
T |
|
| Q |
127 |
acgaattttctgagggaagacgagaccaacttactttctacttgaagaaatgtggttatttatatttgctggaaagnnnnnnnncttgttccattttcaa |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14629045 |
acgaattttctgagggaagacgagaccaacttactttctacttgaagaaatgtggttatttatatttgctggaaa-aaaaaaaacttgttccattttcaa |
14629143 |
T |
|
| Q |
227 |
tttcaataatgtataaaatgttaactttctttgtacacaattgctcactcaggtaatt |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14629144 |
tttcaataatgtataaaatgttaactttctttgtacacaattgctcactcaggtaatt |
14629201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University