View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6065_high_11 (Length: 277)
Name: NF6065_high_11
Description: NF6065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6065_high_11 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 42593140 - 42592874
Alignment:
| Q |
11 |
cacagaaatccaaaatcctggcggggatggaggggcaccatatggattattgggatcttgctcaccaccataaggaccaactcccatgccatacccaccc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42593140 |
cacagaaatccaaaatcctggcggggatggaggggcgccatatggattattgggatcttgctcaccaccataaggaccaactcccatgccatacccaccc |
42593041 |
T |
|
| Q |
111 |
attccacccattggacccccaaggccactattatacattccacctcctccatacatcccagatgacccgtaaaggccgcctccatatcctcctctgtaca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42593040 |
attccacccattggacccccaaggccactattatacattccacctcctccatacatcccagatgacccgtaaaggccgcttccatatcctcctctgtaca |
42592941 |
T |
|
| Q |
211 |
tactgttaccatacatcccaccgccaccatacattcctcctcctagcccgcctcctagcccgccacc |
277 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
42592940 |
tactgtaaccatacatcccaccgccaccatatattcctcctcctagcccgcctccgagcccgccacc |
42592874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University