View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6065_high_14 (Length: 251)
Name: NF6065_high_14
Description: NF6065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6065_high_14 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 27472871 - 27472628
Alignment:
| Q |
8 |
gagcagagatatcgtatttgatacagctcgtaccttattgatcagtgctcatgcatctttcaaaatttgaggtattgcacttctcatcgtctgttgtttg |
107 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27472871 |
gagcagaaatatcgtattcgatacagctcgtaccttattgatcagtgctcatgcatctttcaaaatttgaggtattgcacttctcatcgtctgttgttag |
27472772 |
T |
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| Q |
108 |
atcaactacaagtcattttcaatattggataatgtgattcgacatttctcttgtttcataaggacctcctgtatgttgttcctattcgagtgtttggatc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27472771 |
atcaactacaagtcattttcaatattggataatgtgattcgacatttctcttgtttcataaggacctcctgtattttgttcctattcgagtgtttggatc |
27472672 |
T |
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| Q |
208 |
cacttattttgttcatgatctaccacctggtcgcgaaagattgt |
251 |
Q |
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| T |
27472671 |
cacatattttgttcatgatctaccacctggccgcgaaagattgt |
27472628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 27465774 - 27465548
Alignment:
| Q |
25 |
ttgatacagctcgtaccttattgatcagtgctcatgcatctttcaaaatttgaggtattgcacttctcatcgtctgttgtttgatcaactacaagtcatt |
124 |
Q |
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||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||| |
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| T |
27465774 |
ttgatacagctcgtaccttattgatcaattctcatgcttctttcaaaatttgaggtattgcacttttcaccgtctgttatttgatcaactacaagtcatt |
27465675 |
T |
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| Q |
125 |
ttcaatattggataatgtgattcgacatttctcttgtttcataaggacctcctgtatgttgttcctattcgagtgtttggatccacttattttgttcatg |
224 |
Q |
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| T |
27465674 |
ttcaatattggataatgtgattccacatttcacttgtttcataaggacctcctttattttgttcctattcgagtgtttggatccacttattttgttcatg |
27465575 |
T |
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| Q |
225 |
atctaccacctggtcgcgaaagattgt |
251 |
Q |
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| T |
27465574 |
atctatctcctggtcgcgaaagattgt |
27465548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 37918989 - 37918785
Alignment:
| Q |
25 |
ttgatacagctcgtaccttattgatcagtgctcatgcatctttcaaaatttgaggtattgcacttctcatcgtctgttgtttgatcaactacaagtcatt |
124 |
Q |
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||||||||||||| ||||||||||||| |||||||||| |||| ||| |||| ||| ||| |||| | | ||||| |||||||||| ||| | ||| |
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| T |
37918989 |
ttgatacagctcgaaccttattgatcaatgctcatgcacctttaaaattttggggtgatgcggttctgacagcctgttatttgatcaaccacatgccatc |
37918890 |
T |
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| Q |
125 |
ttcaatattggataatgtgattcgacatt-tctcttgtttcataaggacctcctgtatgttgttcctattcgagtgtttggatccacttattttgttcat |
223 |
Q |
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||| | |||||||||| ||||| ||||| ||||||||||| |||||||| | ||||| |||| || |||| || ||||| || |||| |||| ||||| |
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| T |
37918889 |
atcagttttggataatgagattccacattctctcttgtttcctaaggaccccttgtattttgtcccacttcgggtttttggctctacttgttttattcat |
37918790 |
T |
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| Q |
224 |
gatct |
228 |
Q |
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||||| |
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| T |
37918789 |
gatct |
37918785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 33832790 - 33832994
Alignment:
| Q |
25 |
ttgatacagctcgtaccttattgatcagtgctcatgcatctttcaaaatttgaggtattgcacttctcatcgtctgttgtttgatcaactacaagtcatt |
124 |
Q |
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||||||||||||| ||||||||||||| |||||||||| |||| ||| |||| ||| ||| |||| | | ||||| |||||||||| || | ||| |
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| T |
33832790 |
ttgatacagctcgaaccttattgatcaatgctcatgcacctttaaaattttggggtgatgcggttctgacagcctgttatttgatcaaccgcatgccatc |
33832889 |
T |
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| Q |
125 |
ttcaatattggataatgtgattcgacatt-tctcttgtttcataaggacctcctgtatgttgttcctattcgagtgtttggatccacttattttgttcat |
223 |
Q |
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||| | |||||||| | ||||| ||||| ||||||||||| |||||||| | ||||| ||| || |||| || ||||| || |||| |||||||||| |
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| T |
33832890 |
atcagttttggataacgagattccacattctctcttgtttcctaaggaccccttgtattctgtcccacttcgggtttttggctctacttgttttgttcat |
33832989 |
T |
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| Q |
224 |
gatct |
228 |
Q |
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||||| |
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| T |
33832990 |
gatct |
33832994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 27517765 - 27517865
Alignment:
| Q |
130 |
tattggataatgtgattcgacatt-tctcttgtttcataaggacctcctgtatgttgttcctattcgagtgtttggatccacttattttgttcatgatct |
228 |
Q |
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|||||||||||| ||||| ||||| |||||||||| ||||| || |||||| |||| | | | ||||||||||||||||||| | ||||||||| ||| |
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| T |
27517765 |
tattggataatgagattccacattctctcttgttttataagcccccgctgtattttgtacttttacgagtgtttggatccacttctcttgttcatgttct |
27517864 |
T |
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| Q |
229 |
a |
229 |
Q |
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| T |
27517865 |
a |
27517865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 22504823 - 22504772
Alignment:
| Q |
25 |
ttgatacagctcgtaccttattgatcagtgctcatgcatctttcaaaatttg |
76 |
Q |
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||||||||||||| ||||||||||||| |||||||||| |||| ||| |||| |
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| T |
22504823 |
ttgatacagctcgaaccttattgatcaatgctcatgcaccttttaaattttg |
22504772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 46595877 - 46595826
Alignment:
| Q |
25 |
ttgatacagctcgtaccttattgatcagtgctcatgcatctttcaaaatttg |
76 |
Q |
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||||||||||||| ||||||||||||| |||||||||| |||| ||| |||| |
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| T |
46595877 |
ttgatacagctcgaaccttattgatcaatgctcatgcaccttttaaattttg |
46595826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 34770400 - 34770349
Alignment:
| Q |
25 |
ttgatacagctcgtaccttattgatcagtgctcatgcatctttcaaaatttg |
76 |
Q |
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||||||||||||| ||||||||||||| |||||||||| |||| ||| |||| |
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| T |
34770400 |
ttgatacagctcgaaccttattgatcaatgctcatgcaccttttaaattttg |
34770349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 38504236 - 38504287
Alignment:
| Q |
25 |
ttgatacagctcgtaccttattgatcagtgctcatgcatctttcaaaatttg |
76 |
Q |
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||||||||||||| ||||||||||||| |||||||||| |||| ||| |||| |
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| T |
38504236 |
ttgatacagctcgaaccttattgatcaatgctcatgcaccttttaaattttg |
38504287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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