View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6065_high_2 (Length: 473)
Name: NF6065_high_2
Description: NF6065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6065_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 10456399 - 10456137
Alignment:
| Q |
1 |
ccacattgtttcaatcacttcttcgtttcttggaacaagaacaacaaaaatgttgaagttgaagcttctactctttcaacttctcattttgattttaacg |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10456399 |
ccacattgtttcaatcacttcttcatttcttggaacaagaacaacaaaaatgttgaagttgaagcttctactctttcaacttctcattttgattttaacg |
10456300 |
T |
|
| Q |
101 |
ttttcatttccattggcactgtgtaatcatcatgaagccatacaatctctgcttcaccggttggattccaaaagggcacttccatctgtgcaagaatcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10456299 |
ttttcatttccattggcactgtgtaatcatcatgaagccatacaatctctgcttcaccggttggattccaaaagggcacttccatctgtgcaagaatcag |
10456200 |
T |
|
| Q |
201 |
cagccaaaggtgttctcaaaagacttcttccgacccatttctccagctttgagtttatcatag |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10456199 |
cagccaaaggtgttctcaaaagacttcttccgacccatttctccagctttgagtttatcatag |
10456137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 374 - 461
Target Start/End: Complemental strand, 10456026 - 10455940
Alignment:
| Q |
374 |
gtgctctaatacaaagtaagaagggaaaaacaannnnnnnnnnnnctgttacttttgaattagttgttgacttgaccaaagttgttca |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10456026 |
gtgctctaatacaaagtaagaagggaaaaacaattttttttttt-ctgttacttttgaattagttgttgacttgaccaaagttgttca |
10455940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University