View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6065_high_3 (Length: 468)
Name: NF6065_high_3
Description: NF6065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6065_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 43713820 - 43713376
Alignment:
| Q |
1 |
agagtaaatggctaatgtttcaagcttttttagtagtccaatagttggtggaatgaaacctgagatgcttgtttctgctaagcccaacatgatcaaattg |
100 |
Q |
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| T |
43713820 |
agagtaaatggttaatgtttcaagcttttttagtagtccaatagttggtggaatgaaacctgagatgcttgtttctgctaagcccaacatgatcaaattg |
43713721 |
T |
|
| Q |
101 |
gaacagtgtccaatttcctgtggtataggtccttctagattcttgtttcctccagctcttatcacttgaagattcttcatgttgccgattgtgtttggaa |
200 |
Q |
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| T |
43713720 |
gaacagtgtccaatttcctgtggtataggtccttctagattcttgtttcctccagctcttatcacttgaagattcttcatgttgcggattgtgtttggaa |
43713621 |
T |
|
| Q |
201 |
ttttgccactgagctgattgtcatatagggtcagctttgttaattttgtgaggttaccaattgcaattggtattgatcccacgagctcgtttgagttcag |
300 |
Q |
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| T |
43713620 |
ttttgccactgagctgattgtcatatagggtcagctttgttaattttgtgaggttaccaattgcaattggtattgatcccacaagctcgtttgagttcag |
43713521 |
T |
|
| Q |
301 |
atgaagttcctcgagcttgggcaagtagcagagttcaattgggatttcgccgctcaatgcattgtcacttaagtccaagtagctgagttcaacaagattg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
43713520 |
atgaagttcctcgagcttgggcaagtagcagagttcaattgggatttcgccgctcaaagcattgtcacttaagtccaagtagctgagttcaacaagattg |
43713421 |
T |
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| Q |
401 |
cctatttctttcgggatcgaaccagtgagattcgttcccgttaag |
445 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
43713420 |
cctatttctttagggatcgaaccggtgagattcgttcccgttaag |
43713376 |
T |
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