View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6065_high_8 (Length: 290)
Name: NF6065_high_8
Description: NF6065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6065_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 12271658 - 12271910
Alignment:
| Q |
1 |
cgatttgaaaatgcccggttaaaagaggaggtatatataacttttgtttcatttgtttctataattttaattgaaatcatgctagatataatgtgatgat |
100 |
Q |
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| T |
12271658 |
cgatttgaaaatgcccggttaaaagaggaggtacata--acttttgtttcatttgtttctataattttaattgaaatcatgctagatataatgtgatgat |
12271755 |
T |
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| Q |
101 |
atgtcatatgatatgtatttgttttctttttatgaaccgtatgtaaattcttcattttaagattttggaaaataaataaaagagctaattaattgttact |
200 |
Q |
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| T |
12271756 |
atgtcatatgatatgtatttgttttctttttatgaaccgtatataaattcttcattttaagattttgaaaaataaataaaagagctaattgattgttact |
12271855 |
T |
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| Q |
201 |
ttcaattcaataatgtaaataagaaaaacagcaagtattattttctttttttgat |
255 |
Q |
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| T |
12271856 |
ttcaattcaataatgtaaataagaaaaacagcaagtattattttctttttttgat |
12271910 |
T |
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