View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6065_high_9 (Length: 286)
Name: NF6065_high_9
Description: NF6065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6065_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 51761389 - 51761663
Alignment:
| Q |
1 |
taaatatgacttagagatcttgactcacttccattccaaaggcaccaacatttcccttccctataaataaaagccatctccccttactctactcaatcac |
100 |
Q |
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| T |
51761389 |
taaatatgacttagagatcttgactcacttccattccaaaggcaccaacatttcccttccctataaataaaagccatctccccttactctactgaatcac |
51761488 |
T |
|
| Q |
101 |
actcactcttannnnnnnnnnnnnnnnnnnttcctctaatttcttaatccttttgttcttcttttctttgtgatataaacaaaaaatgatgcaaacacat |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51761489 |
actcactcttaaacacaacacaaca-----ttcctctaatttcttaatccttttgttcttcttttctttgtgatataaacaaaaaatgatgcaaacacat |
51761583 |
T |
|
| Q |
201 |
aactccctcacactccttgctttcttcatgatcttgttcatgtcaccgacgtttccttcatccgcaaccgcagcaagacc |
280 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
51761584 |
aactccctcacactccatgctttcttcatgatcttgttcatgtcaccgacgtttccttcatccgcaaccgcggcaagacc |
51761663 |
T |
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