View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6065_low_1 (Length: 491)
Name: NF6065_low_1
Description: NF6065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6065_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 12 - 475
Target Start/End: Original strand, 14134036 - 14134513
Alignment:
| Q |
12 |
atgaacggaaagactattaaataaattagaatgttaatttgttcagtcatttaacctgataaatgcatggatgagtttagaatatcgtttgaattttcta |
111 |
Q |
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| T |
14134036 |
atgaacggaaaaactattaaataaattagaatgttaatttgtttagtcatttaacctgataaatgcatggatgagtttagaatatcgtttgaattttcta |
14134135 |
T |
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| Q |
112 |
ttaggtccaaatttctctttgaatcaaattt--------------aataaagagaatatgttattaaatannnnnnnatcacaaatcttaaggtattcga |
197 |
Q |
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| T |
14134136 |
ttaggtccaaatttctctttgaatcaaatttggcataagcaaccaagtaaagagaatatgttattaaatatttctttatcacaaatcttaaggtattcga |
14134235 |
T |
|
| Q |
198 |
tttgtgtatcctctcacttataaattgctcaacattaatttttctatacaatgtgatacttctaacttatacttgccataacaatcttcctttaagtggg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14134236 |
tttgtgtatcctctcacttataaattgctcaacattaatttttctatacaatgtgatacttctaacttatacttgccataacaatctttctttaagtggg |
14134335 |
T |
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| Q |
298 |
agtccaccctttcatctaagtttactccccgtcattctgaagccttttcatatatatacacttgcaccgtcattatcagaaagtctttcaacacaagaag |
397 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14134336 |
agtccaccctttcatctaagtttactccccctcattctgaagccttttcatatatatacacttgcaccgtcattatcagaaagtctttcaacacaagaag |
14134435 |
T |
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| Q |
398 |
ttggttcctttttgtaaccatttactctcataccactattggttaattagcaaagtccgaaagatcatcacaaattaa |
475 |
Q |
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| T |
14134436 |
ttggttcctttttgtaaccatttactctcataccactattggttaattagcaaagtccgaaagatcatcacaaattaa |
14134513 |
T |
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