View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6065_low_15 (Length: 239)
Name: NF6065_low_15
Description: NF6065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6065_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 12271680 - 12271459
Alignment:
| Q |
1 |
tttaaccgggcattttcaaatcgaagttggtgatcatcaaaacccatatcaggtcccattatacatggcccaccacaattaggacataaaatattacgta |
100 |
Q |
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| T |
12271680 |
tttaaccgggcattttcaaatcgaagttggtgatcatcaaaacccatatcaggtcccattatacatggcccaccacaattaggacataaaatattacgta |
12271581 |
T |
|
| Q |
101 |
acgccgattgtagcctatagttctcattcttcaaactctcattctctgctctaagtatcacattatcagaacgatcttgttgtgcctataataataaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
12271580 |
acgccgattgtagcctatagttctcattcttcaaactctcattctctgctctaagtatcacattatcagaacgatcttgttgtgcctataataataacaa |
12271481 |
T |
|
| Q |
201 |
caacaatatcttgtcttcaaaa |
222 |
Q |
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||||||||| ||||||| |||| |
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| T |
12271480 |
caacaatatattgtcttaaaaa |
12271459 |
T |
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