View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6065_low_16 (Length: 237)
Name: NF6065_low_16
Description: NF6065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6065_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 27871495 - 27871291
Alignment:
| Q |
19 |
acttatgatacctataaatatacaaattcatagtaaagatgttttagttaaaatattattctttctttctttttatatttaaacaattttcttaattggg |
118 |
Q |
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| T |
27871495 |
acttatgatacctataaatatacaaattcatagtaaagatgttttagttaaaatattattctttctttctttttatatttatacatttttcttaattagg |
27871396 |
T |
|
| Q |
119 |
actccacccaatcatagttataagaaaaaacatttattaaattcattgagtacttaatgtatttatttaatannnnnnnnaagaaatttatttattcagt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
27871395 |
actccacccaatcatagttataagaaaaaacatttattagattcattgagtacttaatttatttatttaatattttttttaagaaatttatttattcagt |
27871296 |
T |
|
| Q |
219 |
attat |
223 |
Q |
| |
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||||| |
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| T |
27871295 |
attat |
27871291 |
T |
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