View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6065_low_18 (Length: 231)
Name: NF6065_low_18
Description: NF6065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6065_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 1224145 - 1223941
Alignment:
| Q |
1 |
tgggatttgaatttgtaatagagaaagagaacgttgttgagaatgaagacgtggtgtttgttgaaatgtcaaagagagaaatggggtgtttgtagatgat |
100 |
Q |
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| T |
1224145 |
tgggatttgaatttgtaatagagaaagagaacgttgttgagaatgaagacgtggtgtttgttgaaatgtcaaagagagaaatggggtgtttgtagatgat |
1224046 |
T |
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| Q |
101 |
agcaccggtggagaaagtggtgggttgagttaaggaaacgacgccgttggtggttagagatgaatcgccgaggaaggtgaggttggtggcggtgtctgcg |
200 |
Q |
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| T |
1224045 |
agcaccggtggagaaagtggtgggttgagttaaggaaacgacgccgttggtggttagagatgaatcgccgaggaaggtgaggttggtggcggtgtctgcg |
1223946 |
T |
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| Q |
201 |
gtggt |
205 |
Q |
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||||| |
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| T |
1223945 |
gtggt |
1223941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 41962671 - 41962464
Alignment:
| Q |
1 |
tgggatttgaatttgtaatagagaaagagaacgttgttgagaatgaagacgtggtgtttgttgaaatgtcaaagagagaaatggggtgtttgtagatgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41962671 |
tgggatttgaatttgtaatagagaaagagaacgttgttgagaatgaagacgtggtgtttgttgaaatgtcaaagagagaaatggggtgtttgtagatgat |
41962572 |
T |
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| Q |
101 |
agcaccggtggagaaagtggtgggttgagttaaggaaacgacgccgttggtggttagagatgaatcgccgaggaaggtgaggttggtggcggtgtctgcg |
200 |
Q |
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| T |
41962571 |
agcaccggtggagaaagtggtgggctgagttaaggaaacgacgccgttggtggttagagatgaatcgccgaggaaggtgaggttggtggcggtgtctgcg |
41962472 |
T |
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| Q |
201 |
gtggtgaa |
208 |
Q |
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| T |
41962471 |
gtggtgaa |
41962464 |
T |
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