View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6065_low_19 (Length: 229)
Name: NF6065_low_19
Description: NF6065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6065_low_19 |
 | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 42465541 - 42465350
Alignment:
| Q |
17 |
cacagaatggaagattttgcagttctagggaaccgnnnnnnntgcacgtttctcacaattaaattcatctaattatatttgacatcattgtcaagaaaag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42465541 |
cacagaatggaagattttgcagttctagggaaccgaaaaaaatgcacgtttctcccaattaaattcatctaattatatttgacatcattgtcaagaaaag |
42465442 |
T |
|
| Q |
117 |
tataaatctccttctttgaacagattcggaaacaatttaccttaatcacacatccttcaccgataacactatcagtaatatctgcatcaagc |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42465441 |
tataaatctccttctttgaacaaattcggaaacaatttaccttaatcacacatccttctccgataacactatcagtaatatctgcatcaagc |
42465350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 64 - 208
Target Start/End: Complemental strand, 56537146 - 56537000
Alignment:
| Q |
64 |
gtttctcacaattaaattcatctaattatatttgacatcattgtcaagaaaagtataaatctcc--ttctttgaacagattcggaaacaatttaccttaa |
161 |
Q |
| |
|
||||||||||||||||| ||| |||| |||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
56537146 |
gtttctcacaattaaatccatttaatcatatttgacatctttgtcaagaaaagtataaatctcacattctttgaagagattcggaaacaatttaccttaa |
56537047 |
T |
|
| Q |
162 |
tcacacatccttcaccgataacactatcagtaatatctgcatcaagc |
208 |
Q |
| |
|
||||||||||||| |||||||| ||||||| ||||| ||||||||| |
|
|
| T |
56537046 |
tcacacatccttccccgataaccttatcagtgatatcagcatcaagc |
56537000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 64 - 208
Target Start/End: Original strand, 42300674 - 42300820
Alignment:
| Q |
64 |
gtttctcacaattaaattcatctaattatatttgacatcattgtcaagaaaagtataaatctcc--ttctttgaacagattcggaaacaatttaccttaa |
161 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||||||||| ||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
42300674 |
gtttctcacaattaaatccatttaagcatatttgacatctttgtcaagaaaagtataaacctcacattcttcgaacagattcggaaacaatttaccttaa |
42300773 |
T |
|
| Q |
162 |
tcacacatccttcaccgataacactatcagtaatatctgcatcaagc |
208 |
Q |
| |
|
|| |||||||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
42300774 |
tcgcacatccttccccgataacactatcagtgatatcaacatcaagc |
42300820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 64 - 208
Target Start/End: Original strand, 22760931 - 22761076
Alignment:
| Q |
64 |
gtttctcacaattaaattcatctaattatatttgacatcattgtcaagaaaagtataaatctcc--ttctttgaacagattcggaaacaatttaccttaa |
161 |
Q |
| |
|
|||||| |||||||||| ||| |||| |||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
22760931 |
gtttctaacaattaaat-catttaatcatatttgacatctttgtcaagaaaagtataaatctcacattcttcgaacagattcggaaacaatttaccttaa |
22761029 |
T |
|
| Q |
162 |
tcacacatccttcaccgataacactatcagtaatatctgcatcaagc |
208 |
Q |
| |
|
|| || ||||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
22761030 |
tcgcaaatccttccccgataacactatcagtgatatcagcatcaagc |
22761076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 37079143 - 37079091
Alignment:
| Q |
156 |
ccttaatcacacatccttcaccgataacactatcagtaatatctgcatcaagc |
208 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| || ||||| ||||||||| |
|
|
| T |
37079143 |
ccttaattacacatccttcaccaataacactatcggtgatatcagcatcaagc |
37079091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 208
Target Start/End: Complemental strand, 1491 - 1344
Alignment:
| Q |
64 |
gtttctcacaattaaattcatctaattatatttgacatcattgtcaagaaaagtataaatct--ccttctttgaacagattcggaaacaatttaccttaa |
161 |
Q |
| |
|
||||||||||||||||| ||| |||| |||||||||||| ||||||||||||||||| |||| | ||||| |||||||||| ||||||||||||||||| |
|
|
| T |
1491 |
gtttctcacaattaaatccatttaatcatatttgacatctttgtcaagaaaagtatatatctcacattcttcgaacagattcagaaacaatttaccttaa |
1392 |
T |
|
| Q |
162 |
tcacacatccttcaccg-ataacactatcagtaatatctgcatcaagc |
208 |
Q |
| |
|
|| || ||||||| | | |||||||||| ||| ||||| ||||||||| |
|
|
| T |
1391 |
tcgcaaatccttcgctgaataacactattagtgatatcagcatcaagc |
1344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 64 - 208
Target Start/End: Complemental strand, 18317507 - 18317360
Alignment:
| Q |
64 |
gtttctcacaattaaattcatctaattatatttgacatcattgtcaagaaaagtataaatct--ccttctttgaacagattcggaaacaatttaccttaa |
161 |
Q |
| |
|
||||||||||||||||| ||| |||| |||||||||||| ||||||||||||||||| |||| | ||||| |||||||||| ||||||||||||||||| |
|
|
| T |
18317507 |
gtttctcacaattaaatccatttaatcatatttgacatctttgtcaagaaaagtatatatctcacattcttcgaacagattcagaaacaatttaccttaa |
18317408 |
T |
|
| Q |
162 |
tcacacatccttcaccg-ataacactatcagtaatatctgcatcaagc |
208 |
Q |
| |
|
|| || ||||||| | | |||||||||| ||| ||||| ||||||||| |
|
|
| T |
18317407 |
tcgcaaatccttcgctgaataacactattagtgatatcagcatcaagc |
18317360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 66 - 169
Target Start/End: Original strand, 48213492 - 48213597
Alignment:
| Q |
66 |
ttctcacaattaaattcatctaattatatttgacatcattgtcaagaaaagtataaatct--ccttctttgaacagattcggaaacaatttaccttaatc |
163 |
Q |
| |
|
|||||||| |||||| ||| |||| |||||||||||| |||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48213492 |
ttctcacagttaaatccatttaatcatatttgacatctttgtcaagaaaagtataaatctcacattctttgaacagtttcggaaacaatttaccttaatc |
48213591 |
T |
|
| Q |
164 |
acacat |
169 |
Q |
| |
|
|||||| |
|
|
| T |
48213592 |
acacat |
48213597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University