View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6065_low_4 (Length: 465)
Name: NF6065_low_4
Description: NF6065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6065_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 3737246 - 3737036
Alignment:
| Q |
18 |
actagttttgtcatatctacttatactggtttcaatatatacatatagacacaaacattgtgttggtcacttctttatggaacattatttggatttagaa |
117 |
Q |
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| T |
3737246 |
actagttttgtcatatctacttatactggtttcaatatatacatatagacacaaacattgtgttggtcacttctttatagaacattatttggatttagaa |
3737147 |
T |
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| Q |
118 |
atcatgatttcttctgctagcaaattatacattgtcttcctgttcatatgcctttccgttctcctaatttctgcatcaggtgcaaactaactaagcaact |
217 |
Q |
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| T |
3737146 |
atcatgatttcttctgctagcaaattatacattgtcttcttgtttatatgcctttccgttctcctaatttctgcatcaggtacaaactaactaagcaact |
3737047 |
T |
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| Q |
218 |
gatacaactta |
228 |
Q |
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| T |
3737046 |
gatacaactta |
3737036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 291 - 460
Target Start/End: Complemental strand, 3736972 - 3736803
Alignment:
| Q |
291 |
ctgtgtagaggcaaaagnnnnnnnttgtagagttaagcatcatacaaatgttgagcatacaaatggttgtgataagtccaattgtaatgaagtttgcatc |
390 |
Q |
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| T |
3736972 |
ctgtgtagaggcaaaagaaaaaaattgtagagttaagcatcatacaaatgttgagcatacaaatggttgtgataagtccaattgtaatgaagtttgcatc |
3736873 |
T |
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| Q |
391 |
aacaaagaccatgcaacttacggttattgtgtgcctccaatcccatatttttcattttgcctttgctact |
460 |
Q |
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| T |
3736872 |
aacaaagaccatgcaacttacggttattgtgtgccttcaatcccatatttttcattttgcttttgctact |
3736803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 3740618 - 3740420
Alignment:
| Q |
22 |
gttttgtcatatctacttatactggtttcaatatatacatatagacacaaacattgtgttggtcac---ttctttatggaacattatttggatttagaaa |
118 |
Q |
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| T |
3740618 |
gttttgtcatgtctacctatattagttctaatatatacatatagacacaaacatagtgttgctaacattttttttatagaccaatatttagatttagaaa |
3740519 |
T |
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| Q |
119 |
tcatgatttcttctgctagcaaattatacattgtcttcctgttcatatgcctttccgttctcctaatttctgcatcaggtgcaaactaactaagcaact |
217 |
Q |
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| T |
3740518 |
tcatgatttcctcgactagtaaattctacactgtcttcatgttcatttgtcttgtcgttctccttatttctgcatcaggtacaaactaactaagcaact |
3740420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 372 - 460
Target Start/End: Complemental strand, 3729155 - 3729067
Alignment:
| Q |
372 |
ttgtaatgaagtttgcatcaacaaagaccatgcaacttacggttattgtgtgcctccaatcccatatttttcattttgcctttgctact |
460 |
Q |
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| T |
3729155 |
ttgtaatgaagtctgcatcaacatagaacatgcaacttatggttattgtgtgcctccaatcccatatttttcattttgcttctgctact |
3729067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 450
Target Start/End: Complemental strand, 3740284 - 3740187
Alignment:
| Q |
353 |
atggttgtgataagtccaattgtaatgaagtttgcatcaacaaagaccatgcaacttacggttattgtgtgcctccaatcccatatttttcattttgc |
450 |
Q |
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| T |
3740284 |
atggttgtgacaagtcctcttgtaatgaagtatgcatcaacatagagcatgcaacttatggtgattgtcttcttccaaacccatatttttcattttgc |
3740187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 217
Target Start/End: Complemental strand, 3729412 - 3729307
Alignment:
| Q |
112 |
ttagaaatcatgatttcttctgctagcaaattatacattgtcttcctgttcatatgcctttccgttctcctaatttctgcatcaggtgcaaactaactaa |
211 |
Q |
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| T |
3729412 |
ttagaaatcatgatttcctcaactagtaaattatgcactgtcttcatgttcatctgtctcgtcgttcttcttatttctacatcaggtacaaactatttaa |
3729313 |
T |
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| Q |
212 |
gcaact |
217 |
Q |
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|||||| |
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| T |
3729312 |
gcaact |
3729307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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