View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6065_low_6 (Length: 366)
Name: NF6065_low_6
Description: NF6065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6065_low_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 43425319 - 43424970
Alignment:
| Q |
18 |
ggaagtttgtgtctagaattgtttgcaatagagtataccttgaatgtagatgattgaaccctagctttcttcaatgccccaccagctgaagagctattac |
117 |
Q |
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| T |
43425319 |
ggaagtttgtgtctagaattgtttgcaatagagtataccttgaatgtagatgattgaaccctagctttcttcaatgccccaccagctgaagagctattac |
43425220 |
T |
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| Q |
118 |
acttttgacaaagnnnnnnnnctttcgttatttgaaattacaaattaaaatgttaaagaaaacacagaaattaaccaaaaaggatatataatttttgttg |
217 |
Q |
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| T |
43425219 |
acttttgacaaagaaaaaaaactttcgttatttaaaattacaaattaaaatgttaaagaaaacacagaaattaaccaaaaaggatatataatttttgttg |
43425120 |
T |
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| Q |
218 |
cgtatatttaaagaagatacacagagaaaagcaaacca-nnnnnnnnnatctatatgatacagaaagaatagaagaaccgttttccnnnnnnngttggag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43425119 |
cgtatatttaaagaagatacacagagaaaagcaaaccattttttttttatctatatgatacagaaagaatagaagaaccgttttccaaaaaaagttggag |
43425020 |
T |
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| Q |
317 |
gacaaaatccatttcataaaagtaagatttcaattgacaattggttgaat |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43425019 |
gacaaaatccatttcataaaagtaagatttcaattgacaattggttgaat |
43424970 |
T |
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