View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6065_low_7 (Length: 365)
Name: NF6065_low_7
Description: NF6065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6065_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 12090632 - 12090968
Alignment:
| Q |
11 |
cagagaaaagaaggagcgcaaggccggttattaacttcataggcaagaccttgaggaaatctattgcatggcaacgcgatgtgagaatcgaaatgaaaaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12090632 |
cagagaaaagaaggagcgcaaggccggttattaacttcataggcaagaccttgaggaaatctattgcatggcaacgcgatgtgagaatcgaaatgaaaaa |
12090731 |
T |
|
| Q |
111 |
caagactgaagtggcagaagtgatgatagataccgaatcagctaagagaaacattttaaatgtattttgatccaaggagatgggtgtcccagtttggttg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12090732 |
caagactgaagtggcagaagtgatgatagataccgaatcagctaagagaaacattttaaatgtattttgatccaaggagatgggtgtcccagtttggttg |
12090831 |
T |
|
| Q |
211 |
tttccacccagaatagtgaaggctgcagcaaacatgatagtaaggacaagagaagccacagctatataacaagtagctgtgtcttttgtccatttttctc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12090832 |
tttccacccagaatagtgaaggctgcagcaaacatgatagtaaggacaagagaagccacagctatataacaagtagctgtgtcttttgtccatttttctc |
12090931 |
T |
|
| Q |
311 |
cagctttcactagctcctcatggctttcgaagaatac |
347 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
12090932 |
cagctttcactagctcctcatggctttcgaagaatac |
12090968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 338
Target Start/End: Original strand, 12084580 - 12084916
Alignment:
| Q |
11 |
cagagaaaagaaggagcgcaaggccggttattaacttcataggcaagaccttgaggaaatctattgcatggcaacgcgatgtgagaatcgaaatgaaaaa |
110 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12084580 |
cagagaaaagaagcagcgcaaggccggttataaacttcataggcaagaccttgaggaaatctattgcatggcaacgcgatgtgagaatcgaaatgaaaac |
12084679 |
T |
|
| Q |
111 |
caagactgaagtggcagaagtgatgatagataccgaatcagctaagagaaacattttaaatgtattttgatccaaggagatgggtgtcccagtttggttg |
210 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12084680 |
caagactgaagtggtagaagtgatgatagataccgaatcagctaagagaaacattttaaatatattttgatccaaggagatgggtgtcccagtttggttg |
12084779 |
T |
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| Q |
211 |
tttcca-cccagaatagtgaaggctgcagcaaacatga--------tagtaaggacaagagaagccacagctatataacaagtagctgtgtcttttgtcc |
301 |
Q |
| |
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|||||| ||| ||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12084780 |
tttccaccccggaatagtaaaggctgccgcaaacatgatcataacttagtaaggacaagagaagccacagctatataacaactagctgtgtcttttgtcc |
12084879 |
T |
|
| Q |
302 |
atttttctccagctttcactagctcctcatggctttc |
338 |
Q |
| |
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|||| ||||| |||||||||||||| ||||||||||| |
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| T |
12084880 |
atttctctccggctttcactagctcttcatggctttc |
12084916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 12111671 - 12112010
Alignment:
| Q |
11 |
cagagaaaagaaggagcgcaaggccggttattaacttcataggcaagaccttgaggaaatctattgcatggcaacgcgatgtgagaatcgaaatgaaaaa |
110 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12111671 |
cagagaaaagaaggagtgtgaggccggttattaacttcacgggcaagaccttgaggaaatctattgcatggcaactcgatgtgagaatcgaaatgaaaaa |
12111770 |
T |
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| Q |
111 |
caagactgaagtggcagaagtgatgatagataccgaatcagctaagagaaacattttaaatgtattttgatccaaggagatgggtgtcccagt---ttgg |
207 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | ||| |
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| T |
12111771 |
caagactgaagtggcggaagtgatgatagataccgaatcagctaagagaaacattttaaatgtattttgatctaaggagatgggtgtaccaatttgttga |
12111870 |
T |
|
| Q |
208 |
ttgtttccacccagaatagtgaaggctgcagcaaacatgatagtaaggacaagagaagccacagctatataacaagtagctgtgtcttttgtccattttt |
307 |
Q |
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||||||||||| | ||||| |||||||| |||||||| | ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
12111871 |
ttgtttccaccagggatagtaaaggctgctgcaaacataacagtaaggacgagagaagccacagctatataacaactagctgtgtcttttgtccatttct |
12111970 |
T |
|
| Q |
308 |
ctccagctttcactagctcctcatggctttcgaagaatac |
347 |
Q |
| |
|
|| |||||||||||||||| ||||||||||| | |||||| |
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| T |
12111971 |
ctgcagctttcactagctcttcatggctttcaatgaatac |
12112010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 338
Target Start/End: Complemental strand, 12003446 - 12003148
Alignment:
| Q |
43 |
aacttcataggcaagaccttgaggaaatctattgcatggcaacgcgatgtgagaatcgaaatgaaaaacaagactgaagtggcagaagtgatgatagata |
142 |
Q |
| |
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||||| || |||||||| ||||| |||||| ||||| | || |||||| ||||| |||||||| |||| ||| | |||||||| |||||||||| |
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| T |
12003446 |
aactttatcggcaagactttgagaaaatcttttgcagtgtaatttgatgtgtgaatcccaatgaaaactaagagtgatgaggcagaagcaatgatagata |
12003347 |
T |
|
| Q |
143 |
ccgaatcagctaagagaaacattttaaatgtattttgatccaaggagatgggtgtcccagt---ttggttgtttccacccagaatagtgaaggctgcagc |
239 |
Q |
| |
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| ||| ||||||||||| || |||||| | || | || |||| || | |||| |||||| ||| ||| |||||| | ||||||||| ||||||| |
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| T |
12003346 |
atgcatctgctaagagaaaaatattaaatattttgtaatgcaagaaggtaggtgacccagtattttgattgagtccacctgggatagtgaagactgcagc |
12003247 |
T |
|
| Q |
240 |
aaacatgatagtaaggacaagagaagccacagctatataacaagtagctgtgtcttttgtccatttttctccagctttcactagctcctcatggctttc |
338 |
Q |
| |
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|||||||||||||| || | | ||||||| |||||||| | |||||||| ||||||||| |||| ||||||||||| | ||||||||||||| |||| |
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| T |
12003246 |
aaacatgatagtaatgatgatataagccactcctatataagatgtagctgtctcttttgtcaatttctctccagcttttaatagctcctcatggttttc |
12003148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 347
Target Start/End: Complemental strand, 12064815 - 12064697
Alignment:
| Q |
229 |
aaggctgcagcaaacatgatagtaaggacaagagaagccacagctatataacaagtagctgtgtcttttgtccatttttctccagctttcactagctcct |
328 |
Q |
| |
|
|||||||||| ||||| | ||| |||| ||||||||| ||||||||||| | ||| | ||||||||||||||||||||||| |||||||||||||||| |
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| T |
12064815 |
aaggctgcagtaaacacggcagtgaggatgagagaagccgcagctatataagaggtaaccgtgtcttttgtccatttttctccggctttcactagctcct |
12064716 |
T |
|
| Q |
329 |
catggctttcgaagaatac |
347 |
Q |
| |
|
||||| |||| |||||| |
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|
| T |
12064715 |
ggtggctctcgatgaatac |
12064697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 285 - 328
Target Start/End: Original strand, 11834844 - 11834887
Alignment:
| Q |
285 |
agctgtgtcttttgtccatttttctccagctttcactagctcct |
328 |
Q |
| |
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|||||| ||||||| ||||||||||||||||||||||||||||| |
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|
| T |
11834844 |
agctgtatcttttgcccatttttctccagctttcactagctcct |
11834887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 338
Target Start/End: Original strand, 12008743 - 12008795
Alignment:
| Q |
286 |
gctgtgtcttttgtccatttttctccagctttcactagctcctcatggctttc |
338 |
Q |
| |
|
||||||||||||| |||||| ||||| |||||||||||||||| |||||||| |
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|
| T |
12008743 |
gctgtgtcttttgcccatttctctccttctttcactagctcctcgtggctttc |
12008795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 11748110 - 11748057
Alignment:
| Q |
285 |
agctgtgtcttttgtccatttttctccagctttcactagctcctcatggctttc |
338 |
Q |
| |
|
|||||| ||||||| |||||| |||||||||||||| ||||||| |||||||| |
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|
| T |
11748110 |
agctgtatcttttgcccatttctctccagctttcaccagctccttgtggctttc |
11748057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 338
Target Start/End: Original strand, 11790628 - 11790680
Alignment:
| Q |
286 |
gctgtgtcttttgtccatttttctccagctttcactagctcctcatggctttc |
338 |
Q |
| |
|
||||| ||||||| ||||||||| || |||||||||||||||| |||||||| |
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|
| T |
11790628 |
gctgtttcttttgcccatttttcaccggctttcactagctccttgtggctttc |
11790680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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