View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6066_high_3 (Length: 539)
Name: NF6066_high_3
Description: NF6066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6066_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 99 - 530
Target Start/End: Complemental strand, 41670848 - 41670417
Alignment:
| Q |
99 |
attagatttctatttttcattagaagtacagaaccagtagatttcagggcaaagtaaaattgcaaagagaattgagggcaaaataaaatttcattaattg |
198 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41670848 |
attagttttctatttttcattagaagtacagaactagtagattgcagggcaaagtaaaattgcaaagagaattgagggaaaaataaaatttcattaattg |
41670749 |
T |
|
| Q |
199 |
tcacatgaaaacgagtagatccaaaataaactttacataaaccctaattatataaactagagaaatgtatcgaattcaagagctagtgaatttggtaaca |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41670748 |
tcacatgaaaacgagtagatccaaaataaactttacataaaccctaattatataaactagagaaatgtatcgaattcaagagctagtgaatttggtaaca |
41670649 |
T |
|
| Q |
299 |
gccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttcttgt |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41670648 |
gccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttcttgt |
41670549 |
T |
|
| Q |
399 |
tgtacctcgcaagtctggatgattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaatgtc |
498 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41670548 |
tgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaatgtc |
41670449 |
T |
|
| Q |
499 |
aggatgaacctgcttcagaaccttgatgatgt |
530 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| |
|
|
| T |
41670448 |
aggatgaacctgcttgagaaccttgaagatgt |
41670417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 244 - 530
Target Start/End: Complemental strand, 40796071 - 40795786
Alignment:
| Q |
244 |
aattatataaactagagaaatgtatcgaattcaagagctagtgaatttggtaacagccttggttccctcagagacagcatgcttagcaagttcaccgggg |
343 |
Q |
| |
|
|||||||| || | ||||||||||| |||||||||||| || ||||| || || || ||||||||||| |||||||| ||||| |||||||| ||||| |
|
|
| T |
40796071 |
aattatattaattggagaaatgtata-aattcaagagcttgtaaatttagtgactgctttggttccctcggagacagcgtgcttggcaagttcgccggga |
40795973 |
T |
|
| Q |
344 |
agaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttcttgttgtacctcgcaagtctggatgattcctgagcgagcttctcaaaga |
443 |
Q |
| |
|
||||| ||||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||| | || |||||||||||||||||||||||||||||||||| |
|
|
| T |
40795972 |
agaacgagacgaacagcagtctgaatctcacgagaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaaga |
40795873 |
T |
|
| Q |
444 |
tatcattgatgaagctgttcatgatccccatagccttgcttgagataccaatgtcaggatgaacctgcttcagaaccttgatgatgt |
530 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
40795872 |
tgtcattgatgaaactgttcatgatccccatagccttgctggagattccaatgtcaggatgaacctgcttgagaaccttgaagatgt |
40795786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 41670954 - 41670864
Alignment:
| Q |
17 |
aatataaaccagttttgatgactgattgcaacaagggtgagcacaagagaagaacaaacacaacaactatgagtttcatagcattagattt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41670954 |
aatataaaccagttttgatgactgattgcagcaagggtgagcacaagagaagaacaaacacaacaactatgagtttcatagcattagattt |
41670864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 271 - 530
Target Start/End: Complemental strand, 29391742 - 29391483
Alignment:
| Q |
271 |
aattcaagagctagtgaatttggtaacagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatc |
370 |
Q |
| |
|
||||||||| || || ||||||||||||||||||||||| || || |||||||| || || | ||||||||| ||||| | ||| ||||| || || ||| |
|
|
| T |
29391742 |
aattcaagaactcgtaaatttggtaacagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaaccaaacgcacagccgtttgaatc |
29391643 |
T |
|
| Q |
371 |
tcccgagaagtgattgtaggcttcttgttgtacctcgcaagtctggatgattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatcc |
470 |
Q |
| |
|
|||| || || || || || ||||||||||| | || | ||| || | |||||||||||| ||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
29391642 |
tccctcgacgtaatcgtcggtttcttgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatcc |
29391543 |
T |
|
| Q |
471 |
ccatagccttgcttgagataccaatgtcaggatgaacctgcttcagaaccttgatgatgt |
530 |
Q |
| |
|
||||||| ||| || ||||| || |||||||||||||| || |||||||||| ||||| |
|
|
| T |
29391542 |
ccatagctttggaagaaatacctatatcaggatgaacctgtttgagaaccttgaagatgt |
29391483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 276 - 351
Target Start/End: Complemental strand, 45576474 - 45576399
Alignment:
| Q |
276 |
aagagctagtgaatttggtaacagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaag |
351 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| |||||||| ||| |||||||||| | |||| |||| |||||||| |
|
|
| T |
45576474 |
aagagcttgtgaatttggtcacagctttggtaccctcagaaacaacatgcttagccaattcatcgggcagaacaag |
45576399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 398
Target Start/End: Complemental strand, 33216702 - 33216594
Alignment:
| Q |
290 |
ttggtaacagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtag |
389 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||| || || | |||||| | |||||||| | |||||||| || || | || ||||||||||| | |
|
|
| T |
33216702 |
ttggtcacagccttggtaccctcagaaacagcatgtttggccaattcaccaagaagaacaagtctgacagcagtttgaattttccttgaagtgattgttg |
33216603 |
T |
|
| Q |
390 |
gcttcttgt |
398 |
Q |
| |
|
||||||||| |
|
|
| T |
33216602 |
gcttcttgt |
33216594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 276 - 530
Target Start/End: Complemental strand, 23886098 - 23885844
Alignment:
| Q |
276 |
aagagctagtgaatttggtaacagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccg |
375 |
Q |
| |
|
|||| ||||| || ||||| ||||| |||||||||||||||||||||||||| || | |||||| || |||||||| | || |||||||| || |||| |
|
|
| T |
23886098 |
aagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttccct |
23885999 |
T |
|
| Q |
376 |
agaagtgattgtaggcttcttgttgtacctcgcaagtctggatgattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccata |
475 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
23885998 |
tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatg |
23885899 |
T |
|
| Q |
476 |
gccttgcttgagataccaatgtcaggatgaacctgcttcagaaccttgatgatgt |
530 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||| |||| ||||| |
|
|
| T |
23885898 |
gccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgt |
23885844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 276 - 530
Target Start/End: Complemental strand, 23402345 - 23402091
Alignment:
| Q |
276 |
aagagctagtgaatttggtaacagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccg |
375 |
Q |
| |
|
|||| ||||| || ||||| ||||| ||||||||||| |||||||||||||| || | |||||| || |||||||| | || |||||||| || |||| |
|
|
| T |
23402345 |
aagaactagtaaacttggtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttccct |
23402246 |
T |
|
| Q |
376 |
agaagtgattgtaggcttcttgttgtacctcgcaagtctggatgattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccata |
475 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
23402245 |
tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatg |
23402146 |
T |
|
| Q |
476 |
gccttgcttgagataccaatgtcaggatgaacctgcttcagaaccttgatgatgt |
530 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||| |||| ||||| |
|
|
| T |
23402145 |
gccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgt |
23402091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 276 - 530
Target Start/End: Original strand, 23415716 - 23415970
Alignment:
| Q |
276 |
aagagctagtgaatttggtaacagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccg |
375 |
Q |
| |
|
|||||||||| || || || ||||||||||| |||||||| ||||||||||| || | |||||| || |||||||| | || |||||||| || |||| |
|
|
| T |
23415716 |
aagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccct |
23415815 |
T |
|
| Q |
376 |
agaagtgattgtaggcttcttgttgtacctcgcaagtctggatgattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccata |
475 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
23415816 |
tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatg |
23415915 |
T |
|
| Q |
476 |
gccttgcttgagataccaatgtcaggatgaacctgcttcagaaccttgatgatgt |
530 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||| |||| ||||| |
|
|
| T |
23415916 |
gccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgt |
23415970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 276 - 530
Target Start/End: Original strand, 23453379 - 23453633
Alignment:
| Q |
276 |
aagagctagtgaatttggtaacagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccg |
375 |
Q |
| |
|
|||| ||||| || ||||| ||||||||||| || ||||| ||||||||||| || | |||||| || |||||||||| || |||||||| || |||| |
|
|
| T |
23453379 |
aagaactagtaaacttggtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaatttccct |
23453478 |
T |
|
| Q |
376 |
agaagtgattgtaggcttcttgttgtacctcgcaagtctggatgattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccata |
475 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
23453479 |
tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatg |
23453578 |
T |
|
| Q |
476 |
gccttgcttgagataccaatgtcaggatgaacctgcttcagaaccttgatgatgt |
530 |
Q |
| |
|
||||||||||||||||||||||| || ||||| || |||||||| |||| ||||| |
|
|
| T |
23453579 |
gccttgcttgagataccaatgtctgggtgaacatgattcagaactttgaagatgt |
23453633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 296 - 530
Target Start/End: Complemental strand, 26434275 - 26434041
Alignment:
| Q |
296 |
acagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttct |
395 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| || | ||||||||| |||||||| | || || ||||| || |||| ||||||||||| ||||||| |
|
|
| T |
26434275 |
acagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttct |
26434176 |
T |
|
| Q |
396 |
tgttgtacctcgcaagtctggatgattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaat |
495 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
26434175 |
tgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaat |
26434076 |
T |
|
| Q |
496 |
gtcaggatgaacctgcttcagaaccttgatgatgt |
530 |
Q |
| |
|
||| |||||||| || ||||||||||||| ||||| |
|
|
| T |
26434075 |
gtctggatgaacttgtttcagaaccttgaagatgt |
26434041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 296 - 530
Target Start/End: Complemental strand, 26832986 - 26832752
Alignment:
| Q |
296 |
acagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttct |
395 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| || | ||||||||| |||||||| | || || ||||| || |||| ||||||||||| ||||||| |
|
|
| T |
26832986 |
acagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttct |
26832887 |
T |
|
| Q |
396 |
tgttgtacctcgcaagtctggatgattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaat |
495 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
26832886 |
tgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaat |
26832787 |
T |
|
| Q |
496 |
gtcaggatgaacctgcttcagaaccttgatgatgt |
530 |
Q |
| |
|
||| || ||||| || ||||||||||||| ||||| |
|
|
| T |
26832786 |
gtctgggtgaacttgtttcagaaccttgaagatgt |
26832752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 296 - 530
Target Start/End: Original strand, 34662068 - 34662302
Alignment:
| Q |
296 |
acagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttct |
395 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||| | ||| || || |||||||| | |||||||||||| || |||| ||||| || || ||||||| |
|
|
| T |
34662068 |
acagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttccctcgaagttatcgtcggcttct |
34662167 |
T |
|
| Q |
396 |
tgttgtacctcgcaagtctggatgattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaat |
495 |
Q |
| |
|
|||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| || ||||| || ||||||||||||||||| |
|
|
| T |
34662168 |
tgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataatacccatggctttgcttgagataccaat |
34662267 |
T |
|
| Q |
496 |
gtcaggatgaacctgcttcagaaccttgatgatgt |
530 |
Q |
| |
|
|||||| ||||| || ||||||||||||| ||||| |
|
|
| T |
34662268 |
gtcagggtgaacttgtttcagaaccttgaagatgt |
34662302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 276 - 524
Target Start/End: Complemental strand, 24307494 - 24307246
Alignment:
| Q |
276 |
aagagctagtgaatttggtaacagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccg |
375 |
Q |
| |
|
|||| |||||||| ||||| ||||| ||||| |||||||| ||||||||||| || | |||||| || |||||||| | ||||||||||| || |||| |
|
|
| T |
24307494 |
aagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtctgaatttccct |
24307395 |
T |
|
| Q |
376 |
agaagtgattgtaggcttcttgttgtacctcgcaagtctggatgattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccata |
475 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||||||||||| ||||| || ||||| ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
24307394 |
tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattcccatg |
24307295 |
T |
|
| Q |
476 |
gccttgcttgagataccaatgtcaggatgaacctgcttcagaaccttga |
524 |
Q |
| |
|
|| |||||||||||||||||||| || ||||| || ||||||||||||| |
|
|
| T |
24307294 |
gctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttga |
24307246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 276 - 530
Target Start/End: Complemental strand, 23869003 - 23868749
Alignment:
| Q |
276 |
aagagctagtgaatttggtaacagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccg |
375 |
Q |
| |
|
|||| |||||||| || || ||||| || ||||| ||||| |||||||| || || | |||||| || |||||||| | ||||||||||| || |||| |
|
|
| T |
23869003 |
aagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaatttccct |
23868904 |
T |
|
| Q |
376 |
agaagtgattgtaggcttcttgttgtacctcgcaagtctggatgattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccata |
475 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||||||||||| ||||| || ||||| ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
23868903 |
tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattcccatg |
23868804 |
T |
|
| Q |
476 |
gccttgcttgagataccaatgtcaggatgaacctgcttcagaaccttgatgatgt |
530 |
Q |
| |
|
|| |||||||||||||||||||| || ||||||||||||||||| |||| ||||| |
|
|
| T |
23868803 |
gctttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgt |
23868749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 276 - 530
Target Start/End: Original strand, 23408547 - 23408801
Alignment:
| Q |
276 |
aagagctagtgaatttggtaacagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccg |
375 |
Q |
| |
|
|||||||||| || || || ||||||||||| || ||||| ||||||||||| || | ||| || || |||||||| | || || ||||| || |||| |
|
|
| T |
23408547 |
aagagctagtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttccct |
23408646 |
T |
|
| Q |
376 |
agaagtgattgtaggcttcttgttgtacctcgcaagtctggatgattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccata |
475 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
23408647 |
tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatc |
23408746 |
T |
|
| Q |
476 |
gccttgcttgagataccaatgtcaggatgaacctgcttcagaaccttgatgatgt |
530 |
Q |
| |
|
|| |||||||||||||||||||| || ||||| || |||||||| |||| ||||| |
|
|
| T |
23408747 |
gctttgcttgagataccaatgtctgggtgaacttgtttcagaactttgaagatgt |
23408801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 296 - 530
Target Start/End: Complemental strand, 26436055 - 26435821
Alignment:
| Q |
296 |
acagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttct |
395 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||| || | ||||||||| |||||||| | || || ||||| || |||| ||||||||||| ||||||| |
|
|
| T |
26436055 |
acagccttggtaccctcagaaacatcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttcccttgaagtgattgttggcttct |
26435956 |
T |
|
| Q |
396 |
tgttgtacctcgcaagtctggatgattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaat |
495 |
Q |
| |
|
||||||| | ||||||||||| ||||| |||| ||| ||||| ||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
26435955 |
tgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgatacccatggctttgcttgagataccaat |
26435856 |
T |
|
| Q |
496 |
gtcaggatgaacctgcttcagaaccttgatgatgt |
530 |
Q |
| |
|
||| || ||||| || ||||||||||||| ||||| |
|
|
| T |
26435855 |
gtctgggtgaacttgtttcagaaccttgaagatgt |
26435821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 334 - 456
Target Start/End: Original strand, 23451797 - 23451919
Alignment:
| Q |
334 |
ttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttcttgttgtacctcgcaagtctggatgattcctgagcgagc |
433 |
Q |
| |
|
||||||||| |||||||| | || || ||||| || |||| ||||||||||| |||||||||||||| | ||||||||||| |||| ||||||||| |
|
|
| T |
23451797 |
ttcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattcttgagcgagc |
23451896 |
T |
|
| Q |
434 |
ttctcaaagatatcattgatgaa |
456 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
23451897 |
ttctcaaagatatcgttgatgaa |
23451919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 274 - 530
Target Start/End: Original strand, 40180275 - 40180531
Alignment:
| Q |
274 |
tcaagagctagtgaatttggtaacagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcc |
373 |
Q |
| |
|
||||||||| |||||||||||||||||||| || || ||||| |||||||| ||||| | ||| || || ||||| | | ||||||||| || |||||| |
|
|
| T |
40180275 |
tcaagagctggtgaatttggtaacagccttagtcccttcagaaacagcatgtttagccaattctccaggaagaaccaatctaacagcagtttgaatctcc |
40180374 |
T |
|
| Q |
374 |
cgagaagtgattgtaggcttcttgttgtacctcgcaagtctggatgattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatcccca |
473 |
Q |
| |
|
| |||||| || || ||||||||||| ||||| || | | || |||||||||||||| |||||||||||||| || ||||| ||||||||||| |||| |
|
|
| T |
40180375 |
ctagaagtaatcgtcggcttcttgttatacctagccaaacgagacgattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattccca |
40180474 |
T |
|
| Q |
474 |
tagccttgcttgagataccaatgtcaggatgaacctgcttcagaaccttgatgatgt |
530 |
Q |
| |
|
||||||||||||| | ||| || |||||||||||||| ||||||||||||| ||||| |
|
|
| T |
40180475 |
tagccttgcttgaaacaccgatatcaggatgaacctgtttcagaaccttgaagatgt |
40180531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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