View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6066_low_2 (Length: 597)

Name: NF6066_low_2
Description: NF6066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6066_low_2
NF6066_low_2
[»] chr7 (3 HSPs)
chr7 (1-497)||(32016911-32017422)
chr7 (526-581)||(32016851-32016906)
chr7 (61-105)||(27659295-27659339)
[»] chr5 (2 HSPs)
chr5 (10-105)||(37604698-37604793)
chr5 (329-372)||(919392-919435)
[»] chr2 (4 HSPs)
chr2 (27-82)||(25542676-25542731)
chr2 (1-47)||(3595051-3595097)
chr2 (57-105)||(3594981-3595028)
chr2 (318-362)||(8453176-8453220)
[»] chr6 (1 HSPs)
chr6 (319-369)||(26397728-26397778)
[»] chr8 (1 HSPs)
chr8 (329-369)||(27185603-27185643)


Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 32017422 - 32016911
Alignment:
Q  1 ccaccaaaaaccagaaaaaaggggaggcgcaaacagcagaccagaaagcattaacaggcctcacaaacagcaaagacctcccttcccaggccagatagca 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  32017422 ccaccaaaaaccagaaaaaaggggaggtgcaaacagcagaccagaaagcataaaaaggcctcacaaacagcaaagacctcccttcccaggccagatagca 32017323  T
Q  101 gaaaa---------------caacactccccgcannnnnnnaagacagcagcactactacagatagcagaacagccgcataggggaaaacaccaacaaaa 185  Q
    |||||               ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  32017322 gaaaaagcccaggcagtaaacaacactccccgcacccccccaagacagcagcactactacagatagcagaacagccgcataggggaaaaaaccaacaaaa 32017223  T
Q  186 cctgctgtgaaccaacccagagagcacagctcgaaaaacacagaccctccccccttaaatactaccttcttaagcaatcttcaggatcccaattccacta 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32017222 cctgctgtgaaccaacccagagagcacagctcgaaaaacacagaccctccccccttaaatactaccttcttaagcaatcttcaggatcccaattccactc 32017123  T
Q  286 gtaaaataggcaaggcaaaaccttcaatctcatcaacatccatctccaagacaacaccttgatctcttccaccatctcctccacatcttttgaatgattc 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32017122 gtaaaataggcaaggcaaaaccttcaatctcatcaacatccatctccaagacaacaccttgatctcttccaccatctcctccacatcttttgaatgattc 32017023  T
Q  386 tcaaatatctttgcatttctagctttccatatcacccaaataattgcgtgccaaactaaccaaaaccctttcagcatctacttacctctcgcttccccac 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32017022 tcaaatatctttgcatttctagctttccatatcacccaaataattgcgtgccaaactaaccaaaaccctttccgcatctacttacctctcgcttccccac 32016923  T
Q  486 tccaacattcaa 497  Q
    ||||||||||||    
T  32016922 tccaacattcaa 32016911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 526 - 581
Target Start/End: Complemental strand, 32016906 - 32016851
Alignment:
Q  526 aatccatgatttttctccaaagtcaatcccatgattttcctccaattcttagaaat 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32016906 aatccatgatttttctccaaagtcaatcccatgattttcctccaattcttagaaat 32016851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 27659339 - 27659295
Alignment:
Q  61 tcacaaacagcaaagacctcccttcccaggccagatagcagaaaa 105  Q
    |||||||||||| |||||||||||| |||||||||||||||||||    
T  27659339 tcacaaacagcacagacctcccttctcaggccagatagcagaaaa 27659295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 37604698 - 37604793
Alignment:
Q  10 accagaaaaaaggggaggcgcaaacagcagaccagaaagcattaacaggcctcacaaacagcaaagacctcccttcccaggccagatagcagaaaa 105  Q
    |||| |||| |||||||||||||||||||||||||||| ||  |||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  37604698 accaaaaaacaggggaggcgcaaacagcagaccagaaatcacaaacaggcctcacaaacagcacagacctcccttcccaagccagatagcagaaaa 37604793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 919435 - 919392
Alignment:
Q  329 ctccaagacaacaccttgatctcttccaccatctcctccacatc 372  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||    
T  919435 ctccaagacaacaccttgatctcctccactatctcttccacatc 919392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 25542731 - 25542676
Alignment:
Q  27 gcgcaaacagcagaccagaaagcattaacaggcctcacaaacagcaaagacctccc 82  Q
    ||||||||||||||||||||| ||  |||||||||||||||||| |||||| ||||    
T  25542731 gcgcaaacagcagaccagaaaacacaaacaggcctcacaaacagaaaagacttccc 25542676  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3595097 - 3595051
Alignment:
Q  1 ccaccaaaaaccagaaaaaaggggaggcgcaaacagcagaccagaaa 47  Q
    |||||||||||||||||||| ||| ||| |||||||||||| |||||    
T  3595097 ccaccaaaaaccagaaaaaatggggggcacaaacagcagacaagaaa 3595051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 3595028 - 3594981
Alignment:
Q  57 ggcctcacaaacagcaaagacctcccttcccaggccagatagcagaaaa 105  Q
    |||||||||||||| |||||| |||| |||||| |||||||||||||||    
T  3595028 ggcctcacaaacagaaaagacttccc-tcccagaccagatagcagaaaa 3594981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 362
Target Start/End: Complemental strand, 8453220 - 8453176
Alignment:
Q  318 tcaacatccatctccaagacaacaccttgatctcttccaccatct 362  Q
    |||||||||||||||||||||||||||| | ||| ||||| ||||    
T  8453220 tcaacatccatctccaagacaacaccttcacctcctccacaatct 8453176  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 26397778 - 26397728
Alignment:
Q  319 caacatccatctccaagacaacaccttgatctcttccaccatctcctccac 369  Q
    ||||||||||| ||||||||  ||||||||||||||||| ||||| |||||    
T  26397778 caacatccatcgccaagacattaccttgatctcttccactatctcatccac 26397728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 27185603 - 27185643
Alignment:
Q  329 ctccaagacaacaccttgatctcttccaccatctcctccac 369  Q
    |||||||||||| |||||||||||||||| ||||| |||||    
T  27185603 ctccaagacaaccccttgatctcttccactatctcatccac 27185643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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