View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6066_low_4 (Length: 294)

Name: NF6066_low_4
Description: NF6066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6066_low_4
NF6066_low_4
[»] chr5 (5 HSPs)
chr5 (12-233)||(16470134-16470350)
chr5 (18-70)||(22010948-22011000)
chr5 (262-294)||(16470097-16470129)
chr5 (22-70)||(25369036-25369084)
chr5 (18-70)||(25769602-25769654)
[»] chr2 (7 HSPs)
chr2 (18-112)||(25576542-25576636)
chr2 (12-112)||(13821796-13821895)
chr2 (12-112)||(27597933-27598032)
chr2 (22-112)||(27190200-27190290)
chr2 (22-112)||(27840014-27840104)
chr2 (18-70)||(28141493-28141545)
chr2 (18-70)||(28144337-28144389)
[»] chr3 (3 HSPs)
chr3 (126-231)||(2178659-2178764)
chr3 (18-111)||(16224251-16224344)
chr3 (18-64)||(16226897-16226943)
[»] scaffold0170 (1 HSPs)
scaffold0170 (36-112)||(1156-1231)
[»] chr8 (8 HSPs)
chr8 (18-82)||(21301526-21301590)
chr8 (18-112)||(12149458-12149552)
chr8 (18-110)||(17983215-17983308)
chr8 (29-112)||(23818027-23818108)
chr8 (12-74)||(9006781-9006843)
chr8 (18-81)||(23242166-23242229)
chr8 (18-112)||(24093383-24093477)
chr8 (22-70)||(22815000-22815048)
[»] chr1 (5 HSPs)
chr1 (17-112)||(22533879-22533974)
chr1 (18-112)||(18523120-18523214)
chr1 (28-70)||(25401608-25401650)
chr1 (22-80)||(20886427-20886485)
chr1 (12-63)||(10159024-10159076)
[»] scaffold0009 (2 HSPs)
scaffold0009 (22-112)||(222507-222596)
scaffold0009 (22-112)||(50241-50331)
[»] chr7 (9 HSPs)
chr7 (18-112)||(9560613-9560706)
chr7 (12-112)||(14942871-14942971)
chr7 (12-112)||(15370464-15370564)
chr7 (12-57)||(18098497-18098542)
chr7 (18-112)||(10310180-10310275)
chr7 (18-80)||(12330819-12330881)
chr7 (22-70)||(14961029-14961077)
chr7 (22-70)||(15390501-15390549)
chr7 (28-108)||(17132401-17132480)
[»] chr4 (3 HSPs)
chr4 (22-112)||(12810140-12810230)
chr4 (18-112)||(11889642-11889737)
chr4 (18-112)||(14632907-14633001)
[»] scaffold0031 (1 HSPs)
scaffold0031 (28-112)||(38209-38291)
[»] scaffold0005 (1 HSPs)
scaffold0005 (18-112)||(184291-184385)
[»] chr6 (2 HSPs)
chr6 (22-110)||(21375940-21376027)
chr6 (22-112)||(7391275-7391365)
[»] scaffold0056 (1 HSPs)
scaffold0056 (18-70)||(20691-20743)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 7e-89; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 16470350 - 16470134
Alignment:
Q  12 aaaggttttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |     |||||||||||||||||| |||||||||| ||||||||||||||||    
T  16470350 aaaggttttgaaaacggccacgagaagcactcaggttacttagagggta-----ggtttagaaacaaaaaatacaccatctctcgacaggtttgagattg 16470256  T
Q  112 ctttcaagttagaagtttatgaatggctacaagattaatgttcacattgtcagatgattgggcacaatgttacggcttgtcgttggctacaccctaagca 211  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  16470255 ctttcaaattagaagtttatgaacggctacaagattaatgttcacgttgtcagatgattgagcacaatgttacggcttgtcgttggctacaccctgagca 16470156  T
Q  212 ggttgttgaaaaaattgatcgc 233  Q
    ||||||||||||| ||||||||    
T  16470155 ggttgttgaaaaagttgatcgc 16470134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 22010948 - 22011000
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggttt 70  Q
    |||||||| |||||| | | |||||||||||||||||||||||||||||||||    
T  22010948 tttgaaaaaggccacaaaatgcactcaggttacttagagggcaggacgggttt 22011000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 16470129 - 16470097
Alignment:
Q  262 ctactcagaaatatgtcgaaaaacataaccaaa 294  Q
    |||||||||||||||||||||||||||||||||    
T  16470129 ctactcagaaatatgtcgaaaaacataaccaaa 16470097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 25369036 - 25369084
Alignment:
Q  22 aaaacggccacgagaagcactcaggttacttagagggcaggacgggttt 70  Q
    ||||||||||||| | ||||| ||||| ||||||| |||||||||||||    
T  25369036 aaaacggccacgaaatgcacttaggttgcttagagagcaggacgggttt 25369084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 25769602 - 25769654
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggttt 70  Q
    |||||||| |||||||| | |||| |||||||||||||| ||| |||||||||    
T  25769602 tttgaaaaaggccacgaaatgcacgcaggttacttagagagcaagacgggttt 25769654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 25576542 - 25576636
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattgc 112  Q
    |||||||| |||||||||| ||||||||||||||||||| ||||||||||||| |||| |||||  ||||  ||| | |||||||||||||||||    
T  25576542 tttgaaaaaggccacgagatgcactcaggttacttagagagcaggacgggttttgaaataaaaagggcactgtctttcgacaggtttgagattgc 25576636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 13821796 - 13821895
Alignment:
Q  12 aaaggttttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattg 111  Q
    |||||||||||||| || ||||||| ||||||||||||||||||| || ||||||| |||||||||||||| |||   ||||| |||| |||||||||||    
T  13821796 aaaggttttgaaaaaggtcacgagatgcactcaggttacttagagagcgggacggggttagaaacaaaaaaggcattgtctctcgaca-gtttgagattg 13821894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 27598032 - 27597933
Alignment:
Q  12 aaaggttttgaaaacg-gccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagatt 110  Q
    ||||||||| |||| | ||||||||| ||||||||||||||||||| |||||||||||||  ||||  |||| ||||| ||||| || ||||||||||||    
T  27598032 aaaggttttaaaaaagagccacgagatgcactcaggttacttagagagcaggacgggtttctaaac--aaaaggcaccgtctctcgataggtttgagatt 27597935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 27190290 - 27190200
Alignment:
Q  22 aaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattgc 112  Q
    |||| |||||||||| ||||||||||||| ||||| |||||||| |||| |||| |||||  ||||  ||||| ||||| |||||||||||    
T  27190290 aaaagggccacgagatgcactcaggttacatagagagcaggacgagttttgaaataaaaagggcactgtctctcgacagatttgagattgc 27190200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 27840104 - 27840014
Alignment:
Q  22 aaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattgc 112  Q
    |||| |||||||||| ||||||||||||| ||||| |||||||| |||| |||| |||||  ||||  ||||| ||||| |||||||||||    
T  27840104 aaaagggccacgagatgcactcaggttacatagagagcaggacgagttttgaaataaaaagggcactgtctctcgacagatttgagattgc 27840014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 28141545 - 28141493
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggttt 70  Q
    |||||||| |||||| | | ||||||||||||||||||| ||| |||||||||    
T  28141545 tttgaaaaaggccacaaaatgcactcaggttacttagagagcaagacgggttt 28141493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 28144337 - 28144389
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggttt 70  Q
    |||||||| |||||||| | ||||||||||||||||||| ||| ||| |||||    
T  28144337 tttgaaaaaggccacgaaatgcactcaggttacttagagagcaagacaggttt 28144389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 2178659 - 2178764
Alignment:
Q  126 gtttatgaatggctacaagattaatgttcacattgtcagatgattgggcacaatgttacggcttgtcgttggctacaccctaagcaggttgttgaaaaaa 225  Q
    |||||||||||||| |  ||||| |||||||||||||| |||||||| ||| ||||||||||||  |||||||| ||||| |  |||||||| ||||| |    
T  2178659 gtttatgaatggctccctgattattgttcacattgtcaaatgattggtcacgatgttacggcttagcgttggctgcacccaacacaggttgtggaaaaga 2178758  T
Q  226 ttgatc 231  Q
    ||||||    
T  2178759 ttgatc 2178764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 16224344 - 16224251
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattg 111  Q
    |||||||| |||||||||| ||||||| |||||||||||  ||||||| |||| |||| |||||  ||||  ||||| || |||||||||||||    
T  16224344 tttgaaaaaggccacgagaggcactcatgttacttagagaccaggacgagttttgaaataaaaagggcactgtctctcgataggtttgagattg 16224251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 16226943 - 16226897
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggac 64  Q
    |||||||| |||||||| | ||||||||||||||||||| |||||||    
T  16226943 tttgaaaaaggccacgaaatgcactcaggttacttagagagcaggac 16226897  T

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Target: scaffold0170 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 1156 - 1231
Alignment:
Q  36 aagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattgc 112  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    |||  |||||||||||||||||||||||    
T  1156 aagcactcaggttacttagagagcaggacgggtttagaaacaaaagga-cactgtctcttgacaggtttgagattgc 1231  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 21301590 - 21301526
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaa 82  Q
    |||||||| |||||||||| ||||||||||||||||||| ||||||||||||| |||| ||||||    
T  21301590 tttgaaaaaggccacgagatgcactcaggttacttagagagcaggacgggttttgaaataaaaaa 21301526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 12149552 - 12149458
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattgc 112  Q
    |||||||| |||||||||| ||||||||||||||||||| ||| |||||||||  ||| |||||  |||   ||||| |||||||||||||||||    
T  12149552 tttgaaaaaggccacgagatgcactcaggttacttagagagcaagacgggtttttaaataaaaagggcattgtctctcgacaggtttgagattgc 12149458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 17983215 - 17983308
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaa-tgcaccatctcttgacaggtttgagatt 110  Q
    |||||||| |||||||||| ||||||| ||||||||||| |||||| | |||| |||| ||||||  ||||| ||||| |||||||||||||||    
T  17983215 tttgaaaaaggccacgagatgcactcaagttacttagagagcaggatgagttttgaaataaaaaagggcaccgtctctcgacaggtttgagatt 17983308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 23818027 - 23818108
Alignment:
Q  29 ccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattgc 112  Q
    |||||||| ||||||||||||||||||| |||||||| ||||  ||||  |||| ||||  ||||| |||||||||||||||||    
T  23818027 ccacgagatgcactcaggttacttagagagcaggacgagtttgtaaac--aaaaggcactgtctctcgacaggtttgagattgc 23818108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 9006781 - 9006843
Alignment:
Q  12 aaaggttttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaa 74  Q
    |||||||||  ||| |||||||||| ||||||||||| ||||||| |||||||| ||||||||    
T  9006781 aaaggttttagaaaaggccacgagatgcactcaggttgcttagagagcaggacgagtttagaa 9006843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 23242166 - 23242229
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaa 81  Q
    |||||||| |||| ||||| |||||||||||||||| || |||||||| |||| |||| |||||    
T  23242166 tttgaaaaaggcctcgagatgcactcaggttacttaaagagcaggacgagttttgaaataaaaa 23242229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 24093477 - 24093383
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattgc 112  Q
    |||||||| || ||||| | |||||||||||||||||||  ||||||| ||||   |  |||||  |||| |||||| |||||||||||||||||    
T  24093477 tttgaaaaaggtcacgaaatgcactcaggttacttagagatcaggacgagttttagagtaaaaagggcactatctctcgacaggtttgagattgc 24093383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 22815000 - 22815048
Alignment:
Q  22 aaaacggccacgagaagcactcaggttacttagagggcaggacgggttt 70  Q
    |||| |||||||| | ||||||||||| ||||||| |||||||||||||    
T  22815000 aaaaaggccacgaaatgcactcaggttgcttagagagcaggacgggttt 22815048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 22533974 - 22533879
Alignment:
Q  17 ttttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattgc 112  Q
    ||||||||| || ||||||| ||||||||||||||||||| ||||||||  ||| |||| |||||  ||||  ||||| |||||||||||||||||    
T  22533974 ttttgaaaaaggtcacgagatgcactcaggttacttagagagcaggacgaattttgaaataaaaatggcactgtctctcgacaggtttgagattgc 22533879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 18523214 - 18523120
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattgc 112  Q
    |||||||| ||| |||||| ||||| || |||||||||| ||||||||||||| |||  ||| |  ||||  ||| |||||||||||||||||||    
T  18523214 tttgaaaaaggcgacgagatgcacttagtttacttagagagcaggacgggttttgaattaaagagggcactgtcttttgacaggtttgagattgc 18523120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 25401608 - 25401650
Alignment:
Q  28 gccacgagaagcactcaggttacttagagggcaggacgggttt 70  Q
    ||||||||| ||||||||||||||||||| |||||||||||||    
T  25401608 gccacgagatgcactcaggttacttagagagcaggacgggttt 25401650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 20886427 - 20886485
Alignment:
Q  22 aaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaa 80  Q
    |||| |||||||||| ||| ||||||| ||||||||||| ||||||| |||||| ||||    
T  20886427 aaaagggccacgagatgcattcaggttgcttagagggcaagacgggtatagaaataaaa 20886485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 10159076 - 10159024
Alignment:
Q  12 aaaggttttgaaaacg-gccacgagaagcactcaggttacttagagggcagga 63  Q
    ||||| |||||||| | ||||||||| ||||||||||||||||||| ||||||    
T  10159076 aaagggtttgaaaaagagccacgagatgcactcaggttacttagagagcagga 10159024  T

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Target: scaffold0009 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 222507 - 222596
Alignment:
Q  22 aaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattgc 112  Q
    |||| |||||||||| ||||||||||||||||||| | |||||| |||| |||| |||||   |||  |||||||||||||||||||||||    
T  222507 aaaaaggccacgagatgcactcaggttacttagagagaaggacgagttttgaaataaaaaga-cactgtctcttgacaggtttgagattgc 222596  T

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Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 50241 - 50331
Alignment:
Q  22 aaaacggccacgagaagcactcaggttacttagagggcaggacgggtt-tagaaacaaaaaatgcaccatctcttgacaggtttgagattgc 112  Q
    |||| |||||||| | ||||||||||||||||||  |||||||||||| ||| ||| ||||| |||   ||||| |||||||||||||||||    
T  50241 aaaaaggccacgaaatgcactcaggttacttagaaagcaggacgggttgtag-aacgaaaaaggcattgtctctcgacaggtttgagattgc 50331  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 9560706 - 9560613
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattgc 112  Q
    |||||||| |||||  ||| |||||||||||||||||||||||||||   |||||||||| |||| ||||  ||||| || ||||||||||||||    
T  9560706 tttgaaaaaggccagcagatgcactcaggttacttagagggcaggacaactttagaaaca-aaaaggcactgtctctcgataggtttgagattgc 9560613  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 14942871 - 14942971
Alignment:
Q  12 aaaggttttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattg 111  Q
    ||||||||  |||| ||||| || ||||||||||| |||||| || ||||||| ||||| |||| |||||  |||| || ||| ||||||||||||||||    
T  14942871 aaaggtttaaaaaagggccatgataagcactcaggctacttaaagagcaggacaggttttgaaataaaaagggcactatgtctcgacaggtttgagattg 14942970  T
Q  112 c 112  Q
    |    
T  14942971 c 14942971  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 15370464 - 15370564
Alignment:
Q  12 aaaggttttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattg 111  Q
    ||||||||  |||| ||||| || ||||||||||| |||||| || ||||||| ||||| |||| |||||  |||| || ||| ||||||||||||||||    
T  15370464 aaaggtttaaaaaagggccatgataagcactcaggctacttaaagagcaggacaggttttgaaataaaaagggcactatgtctcgacaggtttgagattg 15370563  T
Q  112 c 112  Q
    |    
T  15370564 c 15370564  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 18098542 - 18098497
Alignment:
Q  12 aaaggttttgaaaacggccacgagaagcactcaggttacttagagg 57  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||||    
T  18098542 aaaggttttgaaaatggccacaagatgcactcaggttacttagagg 18098497  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 10310275 - 10310180
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggac-gggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattgc 112  Q
    |||||||| |||||||| | ||||||||||||||||||| |||| || || ||||||   |||||| ||||  ||||| ||||||||||| |||||    
T  10310275 tttgaaaaaggccacgaaatgcactcaggttacttagagagcagaacaggttttagagtaaaaaaaggcacggtctctcgacaggtttgaaattgc 10310180  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 12330819 - 12330881
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaa 80  Q
    |||||||| ||||| |||| ||||||||||||||||||| | || ||  ||||||||||||||    
T  12330819 tttgaaaagggccatgagatgcactcaggttacttagagagaagaacatgtttagaaacaaaa 12330881  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 14961029 - 14961077
Alignment:
Q  22 aaaacggccacgagaagcactcaggttacttagagggcaggacgggttt 70  Q
    |||| |||||| ||| ||||||||||| ||||||| |||||||||||||    
T  14961029 aaaagggccacaagatgcactcaggttgcttagagagcaggacgggttt 14961077  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 15390501 - 15390549
Alignment:
Q  22 aaaacggccacgagaagcactcaggttacttagagggcaggacgggttt 70  Q
    |||| |||||| ||| ||||||||||| ||||||| |||||||||||||    
T  15390501 aaaagggccacaagatgcactcaggttgcttagagagcaggacgggttt 15390549  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 17132401 - 17132480
Alignment:
Q  28 gccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgaga 108  Q
    ||||||| | ||||||||||| ||||||| ||| ||||||||| || | |||||| | || |||||| |||||||||||||    
T  17132401 gccacgaaatgcactcaggttgcttagagagcatgacgggttt-gatataaaaaaggaactatctctcgacaggtttgaga 17132480  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 12810230 - 12810140
Alignment:
Q  22 aaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattgc 112  Q
    |||| ||| |||||| ||||||||||||||||||| ||||||| ||||| |||| | |||  ||||  ||||| |||||||||||||||||    
T  12810230 aaaagggcaacgagatgcactcaggttacttagagagcaggacaggttttgaaatagaaagggcactgtctctcgacaggtttgagattgc 12810140  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 11889737 - 11889642
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggttt-agaaacaaaaaatgcaccatctcttgacaggtttgagattgc 112  Q
    |||||||| |||||||| | ||||||||||||||||||| ||||| ||| ||| |||   |||||| ||||  ||||| |||||||||||||||||    
T  11889737 tttgaaaaaggccacgaaatgcactcaggttacttagagagcagggcggatttcagagtaaaaaaaggcactgtctctcgacaggtttgagattgc 11889642  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 14633001 - 14632907
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattgc 112  Q
    |||||||| |||||| ||| | ||||||||||||||||| ||| |||||||||   || |||||  ||||  ||||| |||||||||||||||||    
T  14633001 tttgaaaaaggccacaagatgtactcaggttacttagagagcaagacgggttttagaataaaaagggcactgtctctcgacaggtttgagattgc 14632907  T

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Target: scaffold0031 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 38209 - 38291
Alignment:
Q  28 gccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattgc 112  Q
    ||||||||| ||||||||||||||||||| |||||||||||||  ||  | |||| ||||  ||||| |||||||||||||||||    
T  38209 gccacgagatgcactcaggttacttagagagcaggacgggtttctaa--agaaaaggcactgtctctcgacaggtttgagattgc 38291  T

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Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 184291 - 184385
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattgc 112  Q
    |||||||| |||||| ||| | ||||||||||||||||| ||| |||||||||   || |||||  ||||  ||||| |||||||||||||||||    
T  184291 tttgaaaaaggccacaagatgtactcaggttacttagagagcaagacgggttttagaataaaaagggcactgtctctcgacaggtttgagattgc 184385  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 21375940 - 21376027
Alignment:
Q  22 aaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagatt 110  Q
    |||| ||||| |||| ||||||||||||||||||| |||||| |||||| ||||  ||||  ||||  ||||| |||||||||||||||    
T  21375940 aaaagggccatgagatgcactcaggttacttagagagcaggatgggttttgaaa-taaaagggcactgtctctcgacaggtttgagatt 21376027  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 7391365 - 7391275
Alignment:
Q  22 aaaacggccacgagaagcactcaggttacttagagggcaggacgggtttagaaacaaaaaatgcaccatctcttgacaggtttgagattgc 112  Q
    |||| ||||||| || ||||| ||||||||||||| |||||||| ||||  ||| |||||  |||   ||||| |||||||||||||||||    
T  7391365 aaaagggccacgggatgcacttaggttacttagagagcaggacgagttttcaaataaaaagggcattgtctctcgacaggtttgagattgc 7391275  T

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Target: scaffold0056 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 20743 - 20691
Alignment:
Q  18 tttgaaaacggccacgagaagcactcaggttacttagagggcaggacgggttt 70  Q
    |||||||| || ||||| | ||||||||||||||||||| | |||||||||||    
T  20743 tttgaaaaaggacacgaaatgcactcaggttacttagagagaaggacgggttt 20691  T

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