View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6067_high_3 (Length: 304)
Name: NF6067_high_3
Description: NF6067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6067_high_3 |
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| [»] scaffold0205 (1 HSPs) |
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| [»] scaffold0650 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 21178677 - 21178948
Alignment:
| Q |
19 |
acctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgagtggaacacctagtgtaaagaca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21178677 |
acctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgaatggaacacctagtgtaaagaca |
21178776 |
T |
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| Q |
119 |
cgcagctatagagaaataaaagttgtgttgtggattaacgaaggacacaaatttcagtttttgtattatcctttacctccaatttatcttgtccttaaat |
218 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||| |
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| T |
21178777 |
cgcagctatagagaaataaaagttgtgttgtggtttaacgaacgacacaaatttcagtttttgtgttatcccttacctccaatttgtcttgtccttaaat |
21178876 |
T |
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| Q |
219 |
cagttttacaattcatatactatacaccaagagttgtcttatcctttgtttcattcttttgcaggtcaaatg |
290 |
Q |
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||||||||||||||| | | |||||| |||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
21178877 |
cagttttacaattcaaacattatacatcaagagttgtcttatcttgtgtttcattcttttgcaggtcaaatg |
21178948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 2896 - 2776
Alignment:
| Q |
19 |
acctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgagtggaacacctagtgtaaagaca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2896 |
acctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgaatggaacacctagtgtaaagaca |
2797 |
T |
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| Q |
119 |
cgcagctatagagaaataaaa |
139 |
Q |
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||||||||||||||||||||| |
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| T |
2796 |
cgcagctatagagaaataaaa |
2776 |
T |
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Target: chr5 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 28360763 - 28360643
Alignment:
| Q |
19 |
acctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgagtggaacacctagtgtaaagaca |
118 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
28360763 |
acctgtgccaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgaatggaacatctagtgtaaagaca |
28360664 |
T |
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| Q |
119 |
cgcagctatagagaaataaaa |
139 |
Q |
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||||||||||||||||||||| |
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| T |
28360663 |
cgcagctatagagaaataaaa |
28360643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 18273990 - 18273870
Alignment:
| Q |
19 |
acctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgagtggaacacctagtgtaaagaca |
118 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
18273990 |
acctgtgtcaagatggatactttgaattaggaagaaaagaaaccacggcaatagtgttctcaaacaattaaaattgaatggaacacctagattaaagaca |
18273891 |
T |
|
| Q |
119 |
cgcagctatagagaaataaaa |
139 |
Q |
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| ||||||||||||||||||| |
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| T |
18273890 |
cacagctatagagaaataaaa |
18273870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 37695573 - 37695503
Alignment:
| Q |
136 |
aaaagttgtgttgtggattaacgaaggacacaaatttcagtttttgtattatcctttacctccaatttatc |
206 |
Q |
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|||||||||||||||| || | || ||||| |||| ||||||||||| || || |||||||||||||||| |
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| T |
37695573 |
aaaagttgtgttgtggtttgatgagggacaaaaatatcagtttttgtcttgtctcttacctccaatttatc |
37695503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 41934632 - 41934740
Alignment:
| Q |
136 |
aaaagttgtgttgtggattaacgaaggacacaaatttcagtttttgtattatcctttacctccaatttatcttgtccttaaatcagttttacaattcata |
235 |
Q |
| |
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|||||||||||||||| ||| |||| ||| ||||||||||||||| || || ||| | |||| ||||||| ||| | |||||||||||||| ||| | |
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| T |
41934632 |
aaaagttgtgttgtggtttagtgaagtacaagaatttcagtttttgtcttgtcttttgcatccagtttatctcatcccttaatcagttttacaaatcaca |
41934731 |
T |
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| Q |
236 |
tactataca |
244 |
Q |
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|||||||| |
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| T |
41934732 |
cactataca |
41934740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 39792869 - 39792956
Alignment:
| Q |
138 |
aagttgtgttgtggattaacgaaggacacaaatttcagtttttgtattatcctttacctccaatttatcttgtccttaaatcagtttt |
225 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||| ||||||| |||| ||| |||||||||||||||||| |||| ||||||| |
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| T |
39792869 |
aagttgtgttgtggtttggtgaaggacaagaatttcaatttttgtcatatcttttgtctccaatttatcttgtccctaaaacagtttt |
39792956 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0650 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0650
Description:
Target: scaffold0650; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 1688 - 1595
Alignment:
| Q |
136 |
aaaagttgtgttgtggattaacgaaggacacaaatttcagtttttgtattatcctttacctccaatttatcttgtccttaaatcagttttacaa |
229 |
Q |
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|||||||||||||||| || || ||||| |||||||||||||||| || ||| || |||||| ||| || | ||||| || ||||||||||| |
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| T |
1688 |
aaaagttgtgttgtggtttggtgagggacaaaaatttcagtttttgtcttgtcccttgcctccagtttgtcctatccttgaaacagttttacaa |
1595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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