View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6067_low_1 (Length: 426)
Name: NF6067_low_1
Description: NF6067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6067_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Complemental strand, 35878681 - 35878272
Alignment:
| Q |
17 |
cacatgccccagtgtgacaaaaaataactaatacatgtgaatttaataaacaaacttataatattagcaatgataagttgataacaaaatgcacactatg |
116 |
Q |
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| T |
35878681 |
cacatgccccagtgtgacaaaaaagaactaatacatgtgaatttaataaacaaacttataatattagcaatgataagttgataacaaaatgcacactatg |
35878582 |
T |
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| Q |
117 |
ttgcttaatctacacagttatctaaactgtaaagtagccaaatcttcaaaaaatagcaacaaataataccaaccaaagcaatttccaaaactagcatcac |
216 |
Q |
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| T |
35878581 |
ttgcttaatctacacagttatctaaactgtaaagtagccaaatcttcaaaaaatggcaacaaataataccaaccaaagcaatttccaaaactagcatcac |
35878482 |
T |
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| Q |
217 |
atgtcacaacatgtaaacaaagaggcatgcaatatggtatttaattcacacaaagagtcacatgtaaaaacaaaagaagcatgagggataaaaatacacc |
316 |
Q |
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| T |
35878481 |
atgtcacagcatgaaaacgaaggggcatgcaatatggtatttaattcacacaaagagtcacatgtaaaaacaaaagaagcatgagggataaaaatacagc |
35878382 |
T |
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| Q |
317 |
tcaaaataacattgaaatacacattaaaactaaaagtccaatcttatgagctaattgcgattgattttgatattgatgttgatataacattaaaagtaaa |
416 |
Q |
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| T |
35878381 |
tcaaaattacattgaaatacacattaaaactaaaagtccaatcttatgagctaattgcgattgattttgatattgatgttgatataacattaaaagtaaa |
35878282 |
T |
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| Q |
417 |
ataaaaatac |
426 |
Q |
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| T |
35878281 |
ataaaaatac |
35878272 |
T |
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