View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6068_high_1 (Length: 435)
Name: NF6068_high_1
Description: NF6068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6068_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 37 - 414
Target Start/End: Complemental strand, 10129449 - 10129078
Alignment:
| Q |
37 |
caacaataataataatgaataccaattcagcttttcgtaacttttaagcattgccaactagtctaacaaaagagttcataaataatatatacgatgactt |
136 |
Q |
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| T |
10129449 |
caacaacaataataatgcataccaattcagcttttcgtaacttttaagcattgccaactagtctaacaaaagagttcataaataatatatacgatgactt |
10129350 |
T |
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| Q |
137 |
tggcttggtatggtgaaataaagactaaccatgttgtcaac-ttgagttgtcatcaaagagataacgatggatgtgtcctatgtatccaaattcgtactt |
235 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10129349 |
tggcttggtatggtgaagtaaagactaaccatgttgtcaactttgagttgtcatcaaagagataacgatggatgtgtcctatatatccaaattcgtactt |
10129250 |
T |
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| Q |
236 |
tggtggtgtataaaaattcaatgttcttactcgtattgactgagtacctaaattcaatgtttgaatataagtcgataattgataatattattgtaattga |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10129249 |
---tggtgtataaaaattcaatgttcttactcgtattgactcagtacctaaattcaatgtttgaatataagtcgataattgataatattattgtcattga |
10129153 |
T |
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| Q |
336 |
attaaatgttcgtttaaatactcagagagatagagtttaccatccatttaagttcaacaaggaacgcgaaggaaatcca |
414 |
Q |
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|||||||||||||||||||||| |||| ||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
10129152 |
attaaatgttcgtttaaatact----gagagagagtttgccatctatttaagttcaacaaggaacgcgaaggaaatcca |
10129078 |
T |
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